Ostreococcus lucimarinus: OSTLU_42076
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Entry
OSTLU_42076 CDS
T01029
Name
(RefSeq) predicted protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSTLU_42076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_42076
03012 Translation factors [BR:
olu03012
]
OSTLU_42076
Enzymes [BR:
olu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OSTLU_42076
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
OSTLU_42076
Translation factors [BR:
olu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
OSTLU_42076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
AAA_19
HA2_N
nSTAND3
AAA_22
ATPase
T2SSE
MoCF_biosynth
AAA_16
PhoH
Sigma70_ner
nSTAND1
Motif
Other DBs
NCBI-GeneID:
5006314
NCBI-ProteinID:
XP_001422257
JGI:
42076
UniProt:
A4S9Z5
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All DBs
Position
17:complement(join(<298905..299732,299889..299986,300176..300833))
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AA seq
528 aa
AA seq
DB search
MKRIRDALPIKAIREDLVKALQTHQVVVVSGGTGSGKSTQCPQYILEDAIQQGEGPNTRI
IVTQPRRIAAISVAERVAAERDEPIGNSVGFAVRLHGNSPRDAANIEFVTTGVLLRRLMR
DQNLEGISHVMIDEVHERDINTDFLLVLLRELITTRPDLRVVLMSATLDAESFSDYFAGE
DTQEKVPLMSVPTKPRWPVEIVHLEDMLDGGGELEVEDEMEVSEDEDDVDDDDDDVDDVD
PALEDMAMKLEDEVSELTIQLLAEVAKHVAAIETDAGRKGSILCFLPGWDEIKSAMAILE
ETTDPELYEKLNVIPLHSTIPQEEQQKVFIPAPDGVVKVILATNIAESSVTINDVLAVVD
SGLVREMSWNAESGMSTMGTVGTSRASATQRTGRAGRVAPGSCYRIYSHGTLHAMAERPT
PEIQRTALEATCLQTCSMTNTGVQHFLSKAMDPPSDETVEYAMDRLFKLGAIKTNEASGG
EVLTPMGRLLSILPLDPGTGRMLIMGAVMKCLDPVLTAAACFSSRDPF
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaattcgcgatgcgctgcccatcaaagccattcgcgaagatctcgtgaaagcg
ttgcaaacacatcaagtggtcgtcgtgagcggaggcacggggagcgggaaatcgacccag
tgtccgcagtacatcttagaagacgccatccaacaaggcgaagggccgaacacgcgcatt
atcgtcacccaaccacgacgtatcgccgcgatatctgtcgctgagcgcgtcgcggcggag
cgcgacgaaccgattgggaactcggtgggtttcgccgtgcgattacacggtaattcaccg
cgcgacgcggcgaacattgaattcgtcacgaccggggttttacttcgcagactcatgaga
gatcaaaatttggaaggtatctcgcacgttatgatcgacgaagttcacgagcgcgacatt
aacaccgactttctgctcgtcttgctccgcgaactcatcaccactcgaccggatttgcga
gtcgttttgatgagcgcgacgctcgacgcggaatcgttcagtgactactttgcgggtgaa
gatacgcaggaaaaggtacctttgatgagcgtaccgacgaaaccgcgatggcctgtagag
atcgtccacctcgaggatatgctagacggtggaggcgagctcgaagtcgaagatgaaatg
gaagtgtctgaggacgaagacgatgtcgacgatgacgacgacgacgtcgacgacgtcgac
cctgcgctcgaagacatggcgatgaagttggaagacgaagtgagcgaactcacgattcaa
ctcctcgccgaagtcgctaaacacgtcgcggctatcgaaaccgacgccggacgtaagggt
agtatcttgtgcttcctacccggttgggatgagataaagtcggcgatggcgatactggag
gagaccaccgaccccgagctttacgagaagttgaacgttataccacttcattcgacgatt
cctcaagaagagcaacaaaaagtgttcataccggcgccagatggcgtggtgaaggtcata
ttagcgacgaacattgccgaatcttctgtcaccatcaacgacgtgctcgccgtggtggac
agcggtctggtacgagagatgtcttggaacgccgagagcggaatgtcgacgatgggcacg
gtcggaacgtcgcgcgcaagcgcgacacaacgaaccggtcgcgctggacgtgtcgcccct
ggatcgtgctaccgaatatattctcacggtactctgcacgccatggcggaacgaccgacg
ccagagatccagcgcacggcgctcgaagcgacttgtttgcagacgtgctcgatgaccaac
accggagtacaacacttcttgtccaaagccatggaccctccgtcggacgagactgtggag
tatgcgatggataggctttttaaactcggcgccatcaagacgaacgaggcgtctggaggc
gaagtcctcacgcccatgggacgattgctgtccatcctcccgctcgatcctgggactgga
cggatgctcatcatgggagcagtgatgaaatgtctcgatccagtgctcaccgctgcggcg
tgtttcagctctcgggatccgttt
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