KEGG   Ostreococcus lucimarinus: OSTLU_42299
Entry
OSTLU_42299       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OSTLU_42299
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:olu03019]
    OSTLU_42299
   03041 Spliceosome [BR:olu03041]
    OSTLU_42299
Messenger RNA biogenesis [BR:olu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     OSTLU_42299
Spliceosome [BR:olu03041]
 Complex B
  Other components
   Prp19-related factors
    OSTLU_42299
 Complex C
    OSTLU_42299
SSDB
Motif
Pfam: HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N TPR_14 HAT_PRP39_C TPR_15 TPR_12 Suf TPR_8 NRDE-2 TPR_2 TPR_19 Mad3_BUB1_I RPN7 UTP6_C TPR_16 ARM_TT21 ARM_TT21_C LemA ANAPC3
Other DBs
NCBI-GeneID: 5006466
NCBI-ProteinID: XP_001422408
JGI: 42299
UniProt: A4SAK9
LinkDB
Position
19:join(151595..152622,152677..154270)
AA seq 873 aa
MARAHESESATTSALSPTRYAHEERVLRTPHDVEAWCDYLDAIDAGDENDDDDDASRAID
RYMIYERAIKHNAHSYKLWYRYLTERARRDRGARFDDAARAKTRACFERALTTMHKMPKI
WIMAIEYVRDACALITETRRMCDRALRALPVTQHERVWAPYVEFIRRDFVPISTARRVYR
RYLKFEPGHAEEYVEFLRKKQCHGEVASKLAELVNDDSFQSLAGKSKHALWLELCDVVTK
HPPSSDAADETDRALDVDAILRGGIRTFTNEVGRLWTALADYYIRRGLFEAARDVYEEGV
ESVSTVRDFSLIFDAYAQFEESVISAKMEAGEDEDEDEDADDSVELLLARLEHLMERRPE
LLSSVMLRQNPHNVHEWEKRVALFEGQPTKQILTYTEAVKTVKPELANGRVASLWVGFAK
FYEDHGDLESAQTVFEKAVGAERAATFKTADDLATCWCEYAEMHLRHKNYDEALAVMRRA
TTPREGFREPRTAAEYDALPARDKVFKSLKMWTLRVDLEESLGDLKSTKAVYDEMISIKV
ATPQILLNYTHLLQEHNFFEDAFQVFERGVNSFKFPYSRELWAAYLTLFVARFKGSKLER
ARDLFEQVIEEAPAKESKQFFLAYAKLEEDYGLAKRAMDVYERAVKRVPVDERLGVYDVY
VAKAMEFFGVAKVRDVFTRAADDGELSNDVSKTLTTRFAEFERKLGEIDRARALYAHASQ
FSDPTKDADFWSTWHEFEVRHGNEETFREMLRIKRAVAASFSDTHFNVSVVAPDVDAAKK
TTDSGDAMARLDAAHEAHAAENAASMPGFVRSHVEGASPPAAAVAVDAGDDAEIDLDALE
APAGVFSGVKRDAAAAGLGAMARFKSARANDDE
NT seq 2622 nt   +upstreamnt  +downstreamnt
atggcgcgcgcgcacgaatccgagtccgcgacgacgtccgcgctgtcgccgacgcgatac
gcgcacgaggagcgcgtgttgcgcacgccgcacgacgtcgaggcgtggtgcgactacctc
gacgcgatcgacgctggcgacgaaaatgacgacgacgacgacgcgtcgcgcgcgatcgat
cggtacatgatatacgaacgggcgataaaacataacgcacactcgtataaactgtggtac
cggtacctcaccgagcgcgcgcgacgcgatcgaggcgcgcgattcgacgacgccgcgcga
gcgaagacgcgcgcgtgcttcgaacgcgcgctgacgacgatgcataaaatgccgaagata
tggataatggcgatagaatacgtgagagatgcgtgcgcgttgatcacggagacgcgaagg
atgtgcgatcgcgcgctgcgggcgttaccggtgacgcaacacgaacgcgtgtgggcgccg
tacgtggagtttattcggcgagactttgtgccgatttcgacggcgcggcgagtgtacagg
cggtatttgaaattcgagccagggcacgcggaggagtacgtcgagtttttgcgtaaaaag
cagtgccacggcgaggtggcgagtaaactcgccgaactcgtcaacgacgacagcttccag
tcgctcgccggtaagtccaagcacgcgttgtggctcgaactgtgcgacgtcgtcaccaag
cacccgccctcgtcggacgccgcggacgagaccgatcgcgcgctggacgtcgacgccatc
ttgcgcgggggaattcgaacgttcacaaacgaggtcgggaggttgtggacggcgctcgcg
gattattacattcgccgcggcttgtttgaagccgcgcgagacgtgtacgaggagggcgtc
gagagcgtctccaccgtgcgcgacttttcgttgattttcgatgcgtacgcgcagttcgaa
gagtccgtcatcagcgcgaagatggaagccggcgaggacgaagacgaagacgaggacgcg
gacgactccgtggagcttttgctcgcgcgattagaacacctcatggaacggcgaccggaa
ttgctttcgtcggtaatgctgagacaaaacccgcacaacgtgcacgagtgggaaaagcgc
gtggcgctgttcgaaggacaaccgacgaagcaaatcttgacgtacacggaagccgtcaaa
acggtgaaaccggagctcgccaacggacgcgtcgcgtcgctttgggtcggattcgcaaag
ttttacgaagaccacggagacttggagagcgcgcagacggtgtttgagaaagccgtgggc
gccgaacgcgcggcgacgttcaagacggcggacgatttagcgacgtgttggtgcgagtac
gcagagatgcatttgcggcacaaaaattacgacgaggcgttggcggtgatgcgtcgagcg
acgacaccgcgcgaaggcttccgcgaacctcgcacggcggcggaatacgacgcgctgccg
gcgcgagacaaggttttcaaatcgctcaagatgtggacgttgcgcgtcgacttggaagaa
tccttgggcgacttgaagtcgaccaaggcggtgtacgacgagatgatttcgatcaaggtg
gcgacgccgcagatactgttgaactacacgcacttgctccaagagcacaatttctttgaa
gacgcgtttcaagtcttcgagcgcggggtgaatagtttcaaatttccgtactcgcgcgag
ctgtgggcggcgtatctcacgctcttcgtcgcgcgtttcaagggctcgaaactcgagcgc
gcgcgagacttgttcgagcaagtgattgaagaagccccggcgaaggagtcgaagcaattt
ttcttggcgtacgccaaactcgaagaggattacggcctcgccaagcgggcgatggacgtg
tacgagcgcgccgtcaagcgcgtgcccgtggacgagagactgggggtgtacgacgtctac
gtggccaaggcgatggaatttttcggcgtcgccaaggtgcgcgacgtcttcacgcgcgcc
gcggacgacggcgagctgtcgaacgacgtgagcaagacgttgacgactaggtttgcggag
tttgagcgcaaactcggcgagatcgatcgcgcgcgcgccctgtacgcgcacgcgtcgcag
tttagcgatcccacaaaggatgcagatttctggtcgacgtggcacgaatttgaggttcgt
cacggcaacgaagagacgtttcgagaaatgcttcgaatcaagcgcgccgtcgccgcgagc
ttttccgacacccacttcaacgtctccgtcgtcgcgccggacgtcgacgcggcgaagaag
acgacggattcgggcgacgccatggcgcgactcgacgccgcccacgaggcgcacgcggcg
gagaacgcggcttccatgcccggcttcgtgcgttcgcacgtcgaaggcgcgtcgccgccc
gccgccgccgtcgctgtcgacgcgggcgacgacgccgagatcgatttggacgccctggaa
gcgcccgccggcgtgttctccggcgtcaagcgcgacgccgccgccgccggtctcggcgcc
atggcgcgatttaagagcgcgcgcgcgaacgatgacgagtag

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