Ostreococcus lucimarinus: OSTLU_42421
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Entry
OSTLU_42421 CDS
T01029
Name
(RefSeq) predicted protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OSTLU_42421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
olu03041
]
OSTLU_42421
Enzymes [BR:
olu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OSTLU_42421
Spliceosome [BR:
olu03041
]
Complex C
Other components
Step II factors
OSTLU_42421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_30
DUF3112
AAA_7
AAA_14
AAA_16
Flavi_DEAD
NB-ARC
T2SSE
PhoH
ABC_tran
Motif
Other DBs
NCBI-GeneID:
5003109
NCBI-ProteinID:
XP_001419195
JGI:
42421
UniProt:
A4S1R9
LinkDB
All DBs
Position
8:543937..546906
Genome browser
AA seq
989 aa
AA seq
DB search
MANANKFVTEGTAVAAEDDDAPAPDDDAEKVLDRAWYDDDEGGGAHGDAHNPFNTNARDE
ARYANKEQEYAKRLTRRDGSLMSMAASRRVSQLNADSNQWEENRMMTSGVIRTKEIDLDF
DDMEENRAVLLVHDTKPPFLDGRMVFTKQQETVVPVKDVTSDMAQIARKGSALVKEVRTK
REENKGRDRFWEMKGSKMGSITGTTQAENKEAAENAQAAKGRDDDRPDVVGADGEIDFKA
GAKFAEHMKGSKASAQSEFAKTKTIKEQREFLPVYGCREDLMHVIRENQIVVVVGETGSG
KTTQMTQYMHEEGYSTFGMVGCTQPRRVAAMSVAKRVSEEMGCELGKEVGYAIRFEDCTG
PDTIIKYMTDGVLLRETLREPDLNMYSCIIMDEAHERSLHTDVLFGILKKVVARRRDFKL
IVTSATLNAEKFSNFFGSVPVFHIPGRTFPVDILYSKTPVEDYVEAAVKQALTVHLSSGP
GDILIFMTGQEEIETVTYTLEERVEQLMSEGTCPPLNVLPIYSQLPSDLQAKIFQDAEDG
NRKCIVSTNIAETSLTLDGVMYVIDSGYCKLSVFNPRMGMNALQVFPCAQAAVNQRSGRA
GRTGPGTCYRLYTEMAFKHEMLVSTVPEIQRTNLGNVVLLLKSLNVDNLLDFDFMDPPPQ
ENILNSMYSLWILGALDNTGGLTKLGSKMVEFPVDPPLAQMLIKAEETGCSNEMLTVVAM
LSVPSVWFRPKDREEESDAAREKFFVPESDHLTLLNVYQQWKNNGYRNDWCNKHFIQGKG
LKKGREVRAQLMDIMKQQKIPLVSCGQDWDVCRRSIAAAYFHQAARLKGVGEYVNARNGM
PCHLHPSSALYGLGYTPDYVVYHELIMTSKEYMQCVTAVEPHWLAEFGPMFFTLKESHSS
MLKSKAKRKEDKAKMEAEMQAKRDEEAQLQEAQRTREEDRRARQRSQIVTPGQRSAATTP
RVDYGTSRPPSSVRRGAGGRTPGRKRFGL
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgcaaacaagtttgttaccgaaggtaccgccgtcgcggccgaagatgacgac
gcgccagccccggatgacgacgcggagaaggttttggatcgcgcgtggtacgacgacgac
gagggcggcggcgcgcacggcgacgcgcacaacccttttaacacgaacgcacgggatgag
gcgcgttacgcgaacaaagaacaagaatacgcgaaaaggttgactcgacgcgacgggtcg
ctcatgtccatggctgcgtcgcgacgcgtcagtcaactcaacgccgattcaaatcaatgg
gaagaaaatcgtatgatgacgtccggtgtgattcgcaccaaggaaattgatttggatttt
gatgacatggaagaaaaccgcgcggttttgctcgtgcacgacacgaaaccgccattctta
gacggccgtatggtgttcacgaagcagcaagagactgtcgtaccggtgaaggacgtcacg
agcgacatggcgcaaatcgcgcgcaaaggaagcgcgttggtgaaggaagtgcgtacgaag
cgagaggagaacaaaggtcgggatcgattttgggaaatgaaagggtcgaagatgggatcg
atcacgggtacgacacaagctgaaaacaaggaagccgcggaaaacgcgcaagcggcgaaa
ggtcgcgatgacgacagaccagacgtcgtcggcgcggacggcgaaatcgatttcaaggct
ggcgccaagtttgccgagcacatgaaaggttcgaaggcgagcgcacaaagcgagttcgcg
aagacgaagacgatcaaagaacagcgtgagttcttacctgtgtacggttgtcgcgaagac
ttgatgcatgtcattcgcgaaaatcaaatcgtagtcgtcgtcggcgaaaccggaagcggt
aagacgacgcaaatgacgcaatacatgcacgaggaaggttactccacattcgggatggtc
ggttgcactcaaccccgtcgtgtagctgcaatgagcgtcgcgaagcgtgtgagcgaggaa
atgggctgtgaactaggtaaggaagtcggttacgccattcgattcgaggactgcacgggg
cctgatacgattatcaagtacatgacggatggcgtgcttcttcgagaaactttgcgcgaa
cctgatcttaacatgtacagctgtatcatcatggacgaagcgcacgaacgatcgttacac
actgacgttctattcggtattctgaagaaagttgtcgcgcgccgtcgcgatttcaagctc
atcgtcacgtcggcgacgttgaacgcagaaaagtttagtaacttctttggatcggtgccg
gttttccacattcctggtcgcacgttcccggtcgatattctgtactccaagacacccgtg
gaggattacgtcgaagctgcggtgaagcaagcgctcactgtgcatctctcgtcgggaccg
ggtgacattttgatcttcatgacgggtcaagaagaaatcgagacggtgacgtacacgttg
gaagagcgcgtcgagcagttgatgagcgaaggcacgtgtccaccgctgaacgttttacca
atctactcacaactcccgagcgatttgcaggcgaagatttttcaagacgcagaggatggt
aaccgaaagtgcatcgtcagtacgaacatcgcggagacgtcgctcacgctcgacggcgtc
atgtacgtcatcgacagtggttattgcaaactttcagtgtttaatcctcgaatgggtatg
aatgctttgcaagttttcccttgcgcgcaagctgcggtgaatcaacgcagcggccgcgcc
ggtcgtactggaccagggacgtgctatcgcctgtacacggagatggcgttcaagcacgaa
atgctcgtctcgacggttcccgagattcaacgcaccaacttgggtaacgtcgtgttactt
ttgaagtcgctcaacgtggataacttgttagattttgacttcatggatcctcctccccaa
gaaaatatcttgaacagcatgtattccctgtggattttaggcgcgctcgacaacactggc
gggctcacgaaactcggctcgaagatggttgagtttcccgtcgacccgccgctggcgcag
atgctcatcaaagcggaagaaacgggctgctcgaacgaaatgctcaccgtcgtcgcgatg
ttatcggttccgtcagtgtggttcaggccgaaggatcgagaggaagaatccgacgccgcg
cgcgaaaagttcttcgttcccgaaagcgaccacttgacgttgctcaacgtgtaccagcaa
tggaaaaataacgggtacaggaacgattggtgcaacaagcatttcattcagggcaaaggt
ctgaagaaaggtagagaggtgcgcgcgcaattgatggatatcatgaagcaacagaaaatc
ccgctcgtgagctgtgggcaagattgggacgtctgccgtcgatccatcgccgccgcgtac
tttcatcaagcggcgcgtttgaaaggcgtcggtgagtatgtcaatgctcgcaatggtatg
ccttgccaccttcatccgagctcagcgctttatggtctgggttacactcctgattacgtc
gtataccacgaactcatcatgacatcgaaagaatacatgcaatgcgtcaccgccgtcgaa
ccgcactggctcgccgaattcggaccgatgtttttcacgctcaaggagagccattcgagc
atgttgaaatcaaaggcgaagcgcaaagaggacaaggcgaagatggaggctgaaatgcaa
gctaaacgcgatgaggaagcacagctgcaagaagcgcagcgcacgcgagaagaagatcgc
cgcgcgagacaaaggagtcaaatcgtgacgccggggcaacgcagcgcggcgacgacgccg
cgcgtagattacggaacgtcgcgtcccccatcgagcgttcggcgcggtgcgggtggccgg
acgccgggaagaaaacgctttggactatag
DBGET
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