Ostreococcus lucimarinus: OSTLU_42847
Help
Entry
OSTLU_42847 CDS
T01029
Name
(RefSeq) predicted protein
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
OSTLU_42847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
olu03009
]
OSTLU_42847
Ribosome biogenesis [BR:
olu03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
OSTLU_42847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Utp13
EIF3I
Beta-prop_EML_2
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_DCAF4
ANAPC4_WD40
Beta-prop_Nup120_160
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IP5PC_F
WDR54
Beta-prop_DCAF12
PROPPIN
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
5003266
NCBI-ProteinID:
XP_001419319
JGI:
42847
UniProt:
A4S179
LinkDB
All DBs
Position
8:complement(join(233128..234869,234957..236169))
Genome browser
AA seq
984 aa
AA seq
DB search
MAIATPARDGGGDGDGTNDGDGDGRETRAPKARAARRETRADEVVYACATREGGVSLTRS
TTRRGDAATTSTTTALARDEGDGEAMTSIAMDRSGTKVFCASRSGRVVRLDAMEDGRGGT
TMRRTKAWSPHKTSPVLDMCVDVTGTLLCTGSADRTARVWDIERGYCTHAFRGKHGGAVT
ATAFHPSVREARAFTAAEDGSLAMWSLTGEAGVGKKGKKASSDGCVAFVANAHVSAVTSI
RIDVESNTLLTAGRDKIVRTFDLDTLNPRTTTAVHETIEDCVILRPDSAIVRDCKVKPPP
GGRGVIFAVVGDGGRVRVWRENAAKHSIESAPLVAVNTLTKGGDDNDEDFEAAAGTFTKC
ALTHDGNRLIGVSGDARLLTYQANAETTSLEIEREIVANTDEVIDERTLARPPREVAVVT
NSPTVRMFDPTTMSCVGSLNGHSAVVLSVDATMTTDGTALILTGAKDHTVRLWDAATREC
IAVGEGHVGAVAAVAFPPNSKNGAPFAISGGVDRVLRVWDIDGVRRNGDGELNATAATVA
HDKSLNGVAVAPHLRMVATCSSDKTAKIWKMPDLVPLATLRGHRRGVWACAFSPSDRVLA
TAGGDKMVKIWSADDRAGSDTNGACLRTLEGHTAAVLSIKFMSRGTQLVTTGGDGLLNLW
NVTSGSCAASIDAHEDKAWALAVASDGDWIATGGTDASMALWKDSTSSTTADAAKKHALA
VEREQAFFNAERSGEVTKAIDLALRLERPGALLRVLTKLLESDYENGDARLRKCVEPLHE
DKLARVLKCVREWNTNGRTCHVAQHVLAAIFRTHTMEELSKVPEISQITRACRAYTERHR
SRLERLYRGTFLVDTLLSRTGALVDDEESMEEVRRTHETLDNFGFMRADDDAPPRRLPAP
TASEEDEPADVADEEMAEPSEDDEPAGEGEAAEKVREDDVVMGPPKKLKRLNAIKRLASD
VEDQRKLLRDPSPRHTRSGKKLSG
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcgcgacgccggcgcgggacggcggcggcgacggcgacgggacgaacgacggc
gacggcgacggacgcgagacgcgcgcgccgaaggcgcgcgcggcgcgacgggagacgcgc
gcggatgaggtggtgtacgcgtgcgcgacgcgcgagggaggggtgtcgctgacgcggtcg
acgacgcggcgaggcgacgcggcgacgacgtcgacgacgacggcgctcgcgcgggacgag
ggcgatggggaggcgatgacgtcgatcgcgatggatcgaagcgggacgaaggtgttttgc
gcgagtcggagcggacgcgtcgtgcggttggacgcgatggaggatgggaggggggggacg
acgatgcggaggacgaaggcgtggtcgccgcacaagacgtcgccggtgttggacatgtgc
gtggacgtcacggggacgctgttgtgcacggggagcgccgatcgaacggcgcgagtgtgg
gacatcgaacgagggtactgcacgcacgcgtttcgcgggaagcacggaggggcggtgacg
gcgacggcgtttcatccgagcgttagagaggcgagagcgttcaccgcggcggaggatggg
tcgctcgcgatgtggtcgctcacgggcgaggcgggcgtcgggaagaagggtaagaaggcc
tcatccgatggctgcgtcgcgttcgtggcgaacgcgcacgtgagtgcggtgacgtcgatt
cgaatcgacgtcgaatcgaacacgttgctcaccgcggggcgggacaaaatagttcgaacg
tttgatttagacacgctcaatccgcgaacgacgacggcggttcacgaaacgatcgaggat
tgcgtgattttacgtccggattcagccatcgttcgcgactgcaaggtgaagccgccgccg
ggcgggcgcggagtcattttcgccgtcgtcggcgacggcggacgcgttcgagtttggcgc
gagaacgcggcgaagcattcgatcgagtccgcacctctcgtagcggtaaatacgctcacc
aaaggaggcgatgataatgacgaagattttgaagccgccgcgggaacgttcacgaagtgt
gcgctcacacacgatgggaaccgtttgattggcgtgagcggcgacgcgcgtttgttgacg
taccaggccaacgcagagacgacgtcgttggagattgaacgcgaaattgttgcgaatacg
gatgaagtgatcgacgagcgaacgctcgcgagaccgccgagagaagtagccgtggtcacc
aactcgcccacggtacgtatgtttgatccgacgacgatgtcatgtgtcggatctttgaac
ggtcacagcgccgttgtgctctcggttgatgccacgatgacgacggacgggacagcgctc
attttgacgggcgcaaaggatcacacggtacgactgtgggacgccgccacgcgagagtgc
atcgccgtcggcgaaggccatgtcggcgcagttgccgcggtagcgtttcccccgaactcg
aaaaatggcgcaccgtttgccatttcgggtggcgtcgaccgcgtgcttcgcgtatgggac
atagatggagttcggcgaaatggcgacggcgaattgaacgctacggcggccacagtggcg
cacgacaagtccctcaacggcgttgccgttgcgccgcacctccgcatggttgccacgtgt
tcgagcgataagacggcgaagatttggaaaatgcccgatttagttccgttggccacgcta
cgcggccatcgtcgtggagtttgggcgtgcgcgttttctccttcggatcgcgtactcgcc
accgcgggcggcgacaagatggtgaagatttggagcgccgatgaccgtgctgggagcgac
accaacggtgcttgcttgcgcacgctcgaaggtcataccgcagcggtgttgagcattaaa
tttatgtctcgaggtacccagcttgtcaccacgggtggcgacgggctgttgaatttatgg
aacgtcacctctgggtcttgcgccgcatccatcgatgcgcacgaagacaaagcttgggcg
ctggccgtggcaagcgatggcgattggatcgccactgggggcaccgacgcgtccatggcg
ctgtggaaggactccacgtcgagcaccaccgccgatgcggcgaagaagcacgccctcgcc
gtcgaacgcgagcaagcattcttcaacgccgagcgctcgggcgaagtcacgaaggcgatc
gatttagcgctcagactcgagcgccctggtgcacttcttcgtgttttgacgaaacttctg
gagagtgactacgaaaatggcgacgccagactccggaaatgcgtcgagccgttgcacgaa
gacaagctcgcgcgagtgctcaagtgcgtgcgcgagtggaacacaaacggacgcacgtgc
cacgtcgcgcaacacgttctcgccgccatcttccgcacacacaccatggaggaactgagc
aaggttccggagatttctcaaatcactagagcgtgtcgggcgtacaccgagcgtcatcgc
tcgcgtctcgagcgtctgtatcgcggaacttttttagtcgacacgctcctctcgcgcacg
ggcgccttggtagacgacgaagagtcgatggaagaagtcaggcgcacccacgaaacactg
gataacttcggtttcatgcgcgcggatgatgacgcgccgccgcgacgtttgcctgctccg
acggcgagcgaagaagacgagcccgccgacgtcgcagacgaagaaatggcggagccgagc
gaggacgacgagcccgccggcgaaggggaagccgccgaaaaagtgcgagaagacgatgtc
gtcatgggtccgccgaaaaagctcaagcgattaaacgcgataaaaagactcgcgtccgac
gtagaggatcaacgcaaactcttgcgcgacccgtctccccgtcatacgcgtagcggcaaa
aaattgagcggctga
DBGET
integrated database retrieval system
