Ostreococcus lucimarinus: OSTLU_43856
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Entry
OSTLU_43856 CDS
T01029
Name
(RefSeq) predicted protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OSTLU_43856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
olu03041
]
OSTLU_43856
Spliceosome [BR:
olu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
OSTLU_43856
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_TEP1_2nd
PRP4
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_Vps41
WD_LRWD1
WDR54
Motif
Other DBs
NCBI-GeneID:
5006699
NCBI-ProteinID:
XP_001422467
JGI:
43856
UniProt:
A4SAN9
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Position
20:60482..61912
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AA seq
476 aa
AA seq
DB search
MTDAEDVELRGAAEIARKQREELVREFESRRRLRATHAPTHDADVRAMLRKYREPITLFG
ERESERRDRLRALLASLDARDGGELDDGAGTRTATDKYGATIVDEGEYNAHATQKETFYT
EGTERLLECRIDIAEWSLPRAAKRVATQREARGKGGRKDERATIDAVVASTSGFQAQCSE
IGDASRPICEVKFYNGGRNAVSASWSGEARKWACDVEGGKLTSELVIRASDHRITGIDAF
DAGDGRARIVTGHADGSAAIWNADGSRAAELKGHASRCGRVAFHPHGGKYVATASFDATW
RLWSAETGEELLCQEGHAKEVYDVAFHPDGSLAASVGLDAVGRVWDLRIGKSIAVLRGHV
KQILSVDFSPNGYHVVTGGDDRTVKSWDLRKSAECAYTNAAHSALVSCVRYEKTSSNGAF
FTSSSYDGSVVVYSARDFAPHKKIGDGAAGKLTAVDVAGDALILSGFDRTLKYYTK
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgacggacgccgaggacgtcgaactgcgcggcgcggcggaaatcgcgcggaaacagcgc
gaggagctggtgcgcgaattcgagtcgcgacgacgtttgcgcgcgacgcacgcgccgacg
cacgatgcggacgtgcgcgcgatgctgcgaaagtaccgcgagccgatcacgctgttcggc
gagcgagagagcgagcggagggatcgattgcgcgcgctgttggcgtcgttggacgcgcga
gacggcggcgaactcgacgacggcgcggggacgcgaacggcgacggataaatacggcgcc
acgatcgtcgacgagggagaatataacgcgcacgcgacgcagaaggagacgttttacacc
gaaggcacggaacggttgctggagtgccgaatagacatcgcggagtggtcgctgccgcgg
gcggcgaagcgcgtggcgacgcaacgcgaggcgagaggtaagggagggagaaaagacgaa
cgggcgacgatcgatgcggtggtggcgtcgacgtcggggttccaggcgcagtgcagcgag
atcggcgacgcgtcgcgaccgatctgtgaggtgaagttttataacggagggagaaacgcg
gtgagcgcgagttggagcggggaggcgcgcaagtgggcgtgcgacgtagagggaggaaaa
ttgacctccgagctcgtcattcgagcgagtgatcatcgaatcactggaatcgacgcgttc
gacgcgggcgacggtcgcgcgcgcatcgtcaccgggcacgccgacggctctgcggcgatt
tggaacgccgacggaagtcgcgcggcggagttgaaaggccacgcctctcgatgcgggcgc
gtggcgtttcatccacacgggggaaagtacgtcgccaccgcgtccttcgacgccacgtgg
cggctttggagcgcggagaccggggaagagttgttgtgtcaagagggccacgccaaggag
gtgtacgacgtcgcgttccaccccgacggttcgctcgccgcgtccgtgggcttagacgcc
gtcgggcgcgtgtgggatctgcgcatcggcaaatccatcgccgtcttacgcggtcacgtc
aagcaaatcctctccgtggacttttctcccaacggctaccacgtcgtcaccggcggcgac
gaccgcaccgtcaagtcgtgggacttgcgcaaatccgccgagtgcgcgtacaccaacgcc
gcgcactccgccctggtctcttgcgtcaggtacgaaaaaacctcatccaacggcgccttc
ttcaccagttccagctacgacggttccgtcgtcgtctactccgcgcgcgacttcgccccg
cacaagaagatcggcgacggcgccgcgggcaagctcaccgccgtcgacgtcgccggcgac
gccctcatcctcagcggtttcgaccgcaccctcaagtattacaccaagtga
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