KEGG   Ostreococcus lucimarinus: OSTLU_43856
Entry
OSTLU_43856       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OSTLU_43856
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:olu03041]
    OSTLU_43856
Spliceosome [BR:olu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    OSTLU_43856
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WDR55 EIF3I Beta-prop_TEP1_2nd PRP4 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_Vps41 WD_LRWD1 WDR54
Other DBs
NCBI-GeneID: 5006699
NCBI-ProteinID: XP_001422467
JGI: 43856
UniProt: A4SAN9
LinkDB
Position
20:60482..61912
AA seq 476 aa
MTDAEDVELRGAAEIARKQREELVREFESRRRLRATHAPTHDADVRAMLRKYREPITLFG
ERESERRDRLRALLASLDARDGGELDDGAGTRTATDKYGATIVDEGEYNAHATQKETFYT
EGTERLLECRIDIAEWSLPRAAKRVATQREARGKGGRKDERATIDAVVASTSGFQAQCSE
IGDASRPICEVKFYNGGRNAVSASWSGEARKWACDVEGGKLTSELVIRASDHRITGIDAF
DAGDGRARIVTGHADGSAAIWNADGSRAAELKGHASRCGRVAFHPHGGKYVATASFDATW
RLWSAETGEELLCQEGHAKEVYDVAFHPDGSLAASVGLDAVGRVWDLRIGKSIAVLRGHV
KQILSVDFSPNGYHVVTGGDDRTVKSWDLRKSAECAYTNAAHSALVSCVRYEKTSSNGAF
FTSSSYDGSVVVYSARDFAPHKKIGDGAAGKLTAVDVAGDALILSGFDRTLKYYTK
NT seq 1431 nt   +upstreamnt  +downstreamnt
atgacggacgccgaggacgtcgaactgcgcggcgcggcggaaatcgcgcggaaacagcgc
gaggagctggtgcgcgaattcgagtcgcgacgacgtttgcgcgcgacgcacgcgccgacg
cacgatgcggacgtgcgcgcgatgctgcgaaagtaccgcgagccgatcacgctgttcggc
gagcgagagagcgagcggagggatcgattgcgcgcgctgttggcgtcgttggacgcgcga
gacggcggcgaactcgacgacggcgcggggacgcgaacggcgacggataaatacggcgcc
acgatcgtcgacgagggagaatataacgcgcacgcgacgcagaaggagacgttttacacc
gaaggcacggaacggttgctggagtgccgaatagacatcgcggagtggtcgctgccgcgg
gcggcgaagcgcgtggcgacgcaacgcgaggcgagaggtaagggagggagaaaagacgaa
cgggcgacgatcgatgcggtggtggcgtcgacgtcggggttccaggcgcagtgcagcgag
atcggcgacgcgtcgcgaccgatctgtgaggtgaagttttataacggagggagaaacgcg
gtgagcgcgagttggagcggggaggcgcgcaagtgggcgtgcgacgtagagggaggaaaa
ttgacctccgagctcgtcattcgagcgagtgatcatcgaatcactggaatcgacgcgttc
gacgcgggcgacggtcgcgcgcgcatcgtcaccgggcacgccgacggctctgcggcgatt
tggaacgccgacggaagtcgcgcggcggagttgaaaggccacgcctctcgatgcgggcgc
gtggcgtttcatccacacgggggaaagtacgtcgccaccgcgtccttcgacgccacgtgg
cggctttggagcgcggagaccggggaagagttgttgtgtcaagagggccacgccaaggag
gtgtacgacgtcgcgttccaccccgacggttcgctcgccgcgtccgtgggcttagacgcc
gtcgggcgcgtgtgggatctgcgcatcggcaaatccatcgccgtcttacgcggtcacgtc
aagcaaatcctctccgtggacttttctcccaacggctaccacgtcgtcaccggcggcgac
gaccgcaccgtcaagtcgtgggacttgcgcaaatccgccgagtgcgcgtacaccaacgcc
gcgcactccgccctggtctcttgcgtcaggtacgaaaaaacctcatccaacggcgccttc
ttcaccagttccagctacgacggttccgtcgtcgtctactccgcgcgcgacttcgccccg
cacaagaagatcggcgacggcgccgcgggcaagctcaccgccgtcgacgtcgccggcgac
gccctcatcctcagcggtttcgaccgcaccctcaagtattacaccaagtga

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