Ostreococcus lucimarinus: OSTLU_43913
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Entry
OSTLU_43913 CDS
T01029
Name
(RefSeq) predicted protein
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSTLU_43913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
olu03000
]
OSTLU_43913
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_43913
04121 Ubiquitin system [BR:
olu04121
]
OSTLU_43913
Enzymes [BR:
olu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
OSTLU_43913
Transcription factors [BR:
olu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
OSTLU_43913
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
OSTLU_43913
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
OSTLU_43913
Ubiquitin system [BR:
olu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
OSTLU_43913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
5004290
NCBI-ProteinID:
XP_001420385
JGI:
43913
UniProt:
A4S557
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All DBs
Position
11:566308..>566949
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AA seq
214 aa
AA seq
DB search
MELASKDDAKGRCPACRTEYDEDAISFDAVPEEELAANAQRAKKREGKAGAANANANGTN
GIKAGSGTGANAAQSQSRKHLQNVRVIQRNLVYVVGLSARCCKEEVLRKNDFFGKYGKIL
KLQVSVNRNGSSSYAGRNADDTGSAYVTFYEENDAMQCIQHIDGTPLDGRILRACFGTTK
YCNAFLKYQPCNNPDCLYLHDIGRDNDSFTKEEM
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atggaattggcgtccaaagacgacgccaaggggcggtgcccggcgtgcaggacggaatac
gacgaggacgccatctcgttcgacgcggtgccggaggaggagctggcggcgaacgcgcaa
agggcgaagaagcgagagggtaaggcgggcgcggcgaacgcgaacgcgaacggaacgaac
ggaatcaaggcggggagcgggacgggagcgaacgcggcgcagtcgcagtcgaggaaacac
ttgcaaaacgtgcgagtgatacagcgtaatttagtctacgtcgtggggttgagcgcgagg
tgttgcaaggaggaagtgttgaggaagaatgacttcttcggcaagtacgggaaaatcctt
aaactgcaagtgtcggtgaatcgaaacgggagttcgtcgtacgcggggaggaacgcggat
gacaccgggagcgcgtacgtgacgttttacgaagaaaacgacgcgatgcagtgcattcaa
cacattgacgggacgccgctcgacgggaggattttacgcgcgtgcttcgggacgacaaag
tattgcaacgcgtttctgaagtatcagccgtgcaacaatccggattgcctgtacttgcac
gacataggacgagataacgattcattcaccaaggaagagatg
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