Ostreococcus lucimarinus: OSTLU_49732
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Entry
OSTLU_49732 CDS
T01029
Name
(RefSeq) predicted protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSTLU_49732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_49732
03036 Chromosome and associated proteins [BR:
olu03036
]
OSTLU_49732
Enzymes [BR:
olu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OSTLU_49732
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
OSTLU_49732
mRNA degradation factors
5'-3' decay
Decapping complex
OSTLU_49732
Chromosome and associated proteins [BR:
olu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
OSTLU_49732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
5002306
NCBI-ProteinID:
XP_001418212
JGI:
49732
UniProt:
A4RYS0
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All DBs
Position
6:310552..311811
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AA seq
419 aa
AA seq
DB search
MGWNERTRRAPPPQPQQNGNWKDTLALPPRDERYRTEDVTATKGNEFEDYFLKRELLMGI
FEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFTIPILEKVDTSKNIIQAVILV
PTRELALQTSQVAKELGKHLGVAVMVTTGGTSLKDDIMRLHQPVHIVVATPGRLVDLASK
SVAKLGQATMLAMDEADKLLSPEFQPVIAQVINFMAKNRQILLYSATFPVTVKDFKDKYL
RKPYVINLMEELTLKGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSVTRVELLAR
KITELGYSCFYIHAKMIQAHRNRVFHDFRNGACRNLVSSDLFTRGIDIQSVNVVINFDFP
KNSETYLHRVGRSGRFGHLGIAVNLITYDDRMNLFRIEQELGTEIQQIPSQIDPSKYCR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgggatggaacgaacgaacgcgcagggcgcccccgccgcagccgcaacaaaacggaaac
tggaaggacacgctcgcgttgccgcctcgagatgagcggtatcgcacggaggatgtcacg
gcgacgaaaggaaatgagtttgaggattattttctcaagagagagctcctgatggggatc
tttgaaaagggttttgagagaccttcgccgattcaggaggagtcgattcccatcgcgctc
acgggacgagacattttggctcgggcaaagaatgggacggggaagacggcggcgtttact
attcccatcctcgagaaggttgataccagtaagaatatcattcaagcggtcatcttggtg
ccgacgcgcgagttggcgctgcaaacgagtcaagtcgcaaaggaactcggaaagcatttg
ggggtcgccgtcatggttaccacaggaggtacttctttgaaggatgatatcatgcgtttg
caccagccggtgcacatcgtcgtcgcgacccctggtcgtctcgtcgatttggcgagtaag
agcgtggctaaattgggccaagctacgatgctcgccatggatgaggccgataagctcctt
tcacccgaattccaacccgtcatcgcccaagtgatcaacttcatggcgaagaaccgacaa
atattgttgtactccgccactttcccggtcacggtgaaggacttcaaggacaagtatttg
cgtaagccttacgttatcaatctcatggaagagctcacgctgaagggtatcacccaatac
tacgccttcgtcgaagaaaagcaaaaggtgcactgcttgaacaccctcttcagcaaactt
caaatcaaccaatccatcattttctgtaacagcgtcactcgcgtagagttgctcgctagg
aaaatcaccgaacttggatattcttgcttctacattcacgccaagatgattcaggcgcac
cgcaaccgcgtcttccacgacttccgcaacggcgcttgccgcaacttggtgtcgtcggat
ctcttcactcgcggtatcgatattcaatccgtcaacgtcgtcatcaacttcgacttcccg
aagaattctgagacgtacttgcacagagtcggtcgatccggccgtttcggtcacctgggc
atcgccgtgaatcttattacttacgacgatcgcatgaatttgttccgcatcgaacaagaa
ctcggaacggagattcaacaaatcccttcccagatcgatccatcaaaatactgccgataa
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