KEGG   Ostreococcus lucimarinus: OSTLU_50012
Entry
OSTLU_50012       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K18655  ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03013  Nucleocytoplasmic transport
olu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    OSTLU_50012
   03015 mRNA surveillance pathway
    OSTLU_50012
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:olu03019]
    OSTLU_50012
Enzymes [BR:olu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     OSTLU_50012
Messenger RNA biogenesis [BR:olu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     OSTLU_50012
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-GeneID: 5002928
NCBI-ProteinID: XP_001418719
JGI: 50012
UniProt: A4S0C2
LinkDB
Position
7:484440..485909
AA seq 489 aa
MSTWADDDGDLPPPPGFEDVRAGAHAAEIADIASQLGGAPAIGTRADAVDAPDVALKSEG
LREEHAGEVVKAIVDPSTPYASAKSFEDLGLSAELLRGLYGEMKFEKPSKIQAETLPLIL
MPPHRNLIAQAHNGSGKTTCFTLGMLSRIDPNLKAPQGLMICPTRELVVQNVSVMERMGK
YTGVTIASTADPKWDNTNRNKIVDQAVIGTPGKILRWMRERQLACNNMRILVFDEADHMM
ATDGHRVDSTKILKHLSMNAKAWQVLLFSATFNEAVKSFATKVVPNANQIFIPATELSLD
VIKQHRVAVNTVEAKDVLLKEKIFPLCDKIGQTIIFVRTREGARRLHASMNASGYKCTVI
EGQMEHADRDRVVKEFRDGLTKILIATDVLSRGLDVSTVTLVINYDMPVEFHNPRSPNYE
TYLHRIGRSGRFGKKGAAFNLILGDSERAICDQIELHFNHKIPEVAFNDDVTFEKVLEDA
GLMSKEEAL
NT seq 1470 nt   +upstreamnt  +downstreamnt
atgtcgacgtgggcggacgacgacggggacctcccgccgccgcccgggttcgaggacgtc
cgcgcgggcgcgcacgcggcggagatcgcggacatcgcgagccagctcggcggcgcgccg
gcgatcgggacgcgcgcggacgccgtggacgcgccggatgtggcgctgaagagcgagggc
ctgcgcgaggagcacgcgggtgaggtggtgaaggcgatcgtggatccgtcgacgccgtac
gcgagcgcgaagtcgttcgaggatctcgggctgagcgcggagctgctcagggggctgtac
ggggagatgaagtttgaaaagccgtcgaagattcaggcggagacgttgccgctgattttg
atgccgccgcatcggaatttgatcgcgcaggcgcataatgggagtgggaagacgacgtgc
ttcacgctcgggatgctgagccggatcgatccgaatctgaaggcgccgcaggggttgatg
atttgcccgacgcgagagctcgtggtgcaaaacgtgagcgtgatggagaggatgggcaag
tacaccggagtcacgatcgcgtccacggcggatccgaagtgggataacacaaatcgtaac
aaaatcgtcgatcaagcggtgatcgggacgcccgggaagattttgcgatggatgcgagag
cgtcagttggcgtgcaacaacatgagaattctcgtcttcgacgaggcggatcacatgatg
gccacggatggacatcgcgtcgacagcacgaaaattctcaagcatctttccatgaacgcc
aaggcgtggcaggtgttgctattcagcgccacgttcaacgaggcggtgaagagcttcgcg
accaaggtggtgccaaacgccaatcaaatcttcattccggcgactgagctttcgctcgac
gtcatcaagcaacaccgcgtcgcggtgaacacggtggaggcgaaagacgtgcttttgaag
gagaagattttcccgctgtgcgataagattggtcagacgatcatcttcgttcgcacgcgc
gagggcgccagacgtctgcacgcgtcgatgaacgcgagcggatacaagtgcaccgtgatc
gaaggacaaatggagcacgccgaccgcgatcgcgtcgtcaaggagttccgcgatggactg
acgaagattctcatcgccaccgatgtcttatcgcgcggtttggacgtgagcacggttacc
ctcgtcatcaactacgacatgccggttgagtttcacaacccgcgttcgccgaattacgaa
acgtatttgcaccgcatcggtcgcagcggccggttcggtaaaaaaggcgcggcgttcaac
ttgatcttaggcgactccgagcgcgcgatttgcgatcagatcgagttgcacttcaaccac
aaaatccccgaagtcgcgttcaacgacgacgtgacgtttgaaaaagtgctcgaagacgcc
ggtttgatgtcgaaggaagaggcgctttga

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