Ostreococcus lucimarinus: OSTLU_50012
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Entry
OSTLU_50012 CDS
T01029
Name
(RefSeq) predicted protein
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03013
Nucleocytoplasmic transport
olu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
OSTLU_50012
03015 mRNA surveillance pathway
OSTLU_50012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_50012
Enzymes [BR:
olu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OSTLU_50012
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
OSTLU_50012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
5002928
NCBI-ProteinID:
XP_001418719
JGI:
50012
UniProt:
A4S0C2
LinkDB
All DBs
Position
7:484440..485909
Genome browser
AA seq
489 aa
AA seq
DB search
MSTWADDDGDLPPPPGFEDVRAGAHAAEIADIASQLGGAPAIGTRADAVDAPDVALKSEG
LREEHAGEVVKAIVDPSTPYASAKSFEDLGLSAELLRGLYGEMKFEKPSKIQAETLPLIL
MPPHRNLIAQAHNGSGKTTCFTLGMLSRIDPNLKAPQGLMICPTRELVVQNVSVMERMGK
YTGVTIASTADPKWDNTNRNKIVDQAVIGTPGKILRWMRERQLACNNMRILVFDEADHMM
ATDGHRVDSTKILKHLSMNAKAWQVLLFSATFNEAVKSFATKVVPNANQIFIPATELSLD
VIKQHRVAVNTVEAKDVLLKEKIFPLCDKIGQTIIFVRTREGARRLHASMNASGYKCTVI
EGQMEHADRDRVVKEFRDGLTKILIATDVLSRGLDVSTVTLVINYDMPVEFHNPRSPNYE
TYLHRIGRSGRFGKKGAAFNLILGDSERAICDQIELHFNHKIPEVAFNDDVTFEKVLEDA
GLMSKEEAL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtgggcggacgacgacggggacctcccgccgccgcccgggttcgaggacgtc
cgcgcgggcgcgcacgcggcggagatcgcggacatcgcgagccagctcggcggcgcgccg
gcgatcgggacgcgcgcggacgccgtggacgcgccggatgtggcgctgaagagcgagggc
ctgcgcgaggagcacgcgggtgaggtggtgaaggcgatcgtggatccgtcgacgccgtac
gcgagcgcgaagtcgttcgaggatctcgggctgagcgcggagctgctcagggggctgtac
ggggagatgaagtttgaaaagccgtcgaagattcaggcggagacgttgccgctgattttg
atgccgccgcatcggaatttgatcgcgcaggcgcataatgggagtgggaagacgacgtgc
ttcacgctcgggatgctgagccggatcgatccgaatctgaaggcgccgcaggggttgatg
atttgcccgacgcgagagctcgtggtgcaaaacgtgagcgtgatggagaggatgggcaag
tacaccggagtcacgatcgcgtccacggcggatccgaagtgggataacacaaatcgtaac
aaaatcgtcgatcaagcggtgatcgggacgcccgggaagattttgcgatggatgcgagag
cgtcagttggcgtgcaacaacatgagaattctcgtcttcgacgaggcggatcacatgatg
gccacggatggacatcgcgtcgacagcacgaaaattctcaagcatctttccatgaacgcc
aaggcgtggcaggtgttgctattcagcgccacgttcaacgaggcggtgaagagcttcgcg
accaaggtggtgccaaacgccaatcaaatcttcattccggcgactgagctttcgctcgac
gtcatcaagcaacaccgcgtcgcggtgaacacggtggaggcgaaagacgtgcttttgaag
gagaagattttcccgctgtgcgataagattggtcagacgatcatcttcgttcgcacgcgc
gagggcgccagacgtctgcacgcgtcgatgaacgcgagcggatacaagtgcaccgtgatc
gaaggacaaatggagcacgccgaccgcgatcgcgtcgtcaaggagttccgcgatggactg
acgaagattctcatcgccaccgatgtcttatcgcgcggtttggacgtgagcacggttacc
ctcgtcatcaactacgacatgccggttgagtttcacaacccgcgttcgccgaattacgaa
acgtatttgcaccgcatcggtcgcagcggccggttcggtaaaaaaggcgcggcgttcaac
ttgatcttaggcgactccgagcgcgcgatttgcgatcagatcgagttgcacttcaaccac
aaaatccccgaagtcgcgttcaacgacgacgtgacgtttgaaaaagtgctcgaagacgcc
ggtttgatgtcgaaggaagaggcgctttga
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