Ostreococcus lucimarinus: OSTLU_50098
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Entry
OSTLU_50098 CDS
T01029
Name
(RefSeq) predicted protein
KO
K13126
polyadenylate-binding protein
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03015
mRNA surveillance pathway
olu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
OSTLU_50098
09123 Folding, sorting and degradation
03018 RNA degradation
OSTLU_50098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_50098
03041 Spliceosome [BR:
olu03041
]
OSTLU_50098
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
OSTLU_50098
mRNA cycle factors
Stress granule specific factors
OSTLU_50098
Spliceosome [BR:
olu03041
]
Complex C
Other components
Complex C specific factors
OSTLU_50098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_occluded
RRM_5
RRM_7
RRM_RdRP1_2
RRM_MARF1
LEM
RBD_DGKtheta
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
5002784
NCBI-ProteinID:
XP_001418998
JGI:
50098
UniProt:
A4S0L2
LinkDB
All DBs
Position
7:complement(join(634969..635350,635376..635388,635463..636786))
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AA seq
572 aa
AA seq
DB search
MSAATATNVTNDAKASNATANADGTTPAAQQPGAGTSSLYVGDLETSVTEAQLYEKFSSI
GPVVSIRVCRDLITRRSLGYAYVNFQSPNDAAHAIDVLNFQVINGKPIRVLYSQRDPAVR
RSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDGQGNSKGYGFVQFETQEAAQA
AIDNVNGMELNDKQVYVGPFQRRAERSNTGEAKFNNVYVKNLSENLSDEKLREKFAEHGA
VTSCVIMRDEEGKSKGFGFVCYEEPEGAAAAVEKLDGYTEDEKTWVVCRAQKKAEREAEL
KAKFDQERRERMEKMAGANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASGVSRGS
AFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRKEERRMRLQAQFAQRMPGAGMPGGM
APYMPPPGVPGAPMYYGQPPPAGHAGQGVPGAQRGRGGRGGPAGGRGQRQNMRYNAAAAM
PMPPMPAEAANPMAILASQLSAAAPDQQRMILGEALYPLIESKDAANAAKITGMLLEMDQ
SEVLHLIESPDALTSKVQEALAVLKAAAEEGA
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgcgacggcgacgaacgtgacgaacgatgcgaaagcgtcgaacgcgacggcg
aacgcggatgggacgacgcccgcggcgcaacaaccgggggcggggacgagctcgctgtac
gtcggggacctggagacctcggtgaccgaggcgcagctgtacgaaaagttctcatccatc
ggaccggtggtgtcgattcgggtgtgccgggatttgatcacgcgacgatcgctcgggtac
gcgtacgtgaactttcaatcgccgaacgatgcggcgcacgcgattgatgtgttgaacttt
caagtcatcaacgggaagccgattcgcgtgttgtactcgcagcgagatccggcggtgcga
agatctggcgtggggaacatcttcatcaagaatctcgataaggcgatcgacaacaaggcg
ttgctcgatacctttgcgcagttcgggacgatcacgagcgccaaggtggcgatggatggc
caagggaactcgaagggctacggcttcgtgcaattcgagacccaagaggcggcgcaggcg
gcgattgacaacgtcaacggtatggaactgaacgacaagcaagtgtacgtcggtccgttc
caacgccgtgccgagcgctcgaacaccggcgaagccaagtttaacaacgtctatgttaag
aacttgagcgaaaacttgagcgacgaaaagttgcgtgaaaagtttgccgagcacggcgcg
gtgacgagctgcgtcatcatgcgcgacgaagaaggcaagtctaagggcttcggcttcgtg
tgctacgaagaacctgaaggcgcggcggccgcggtcgaaaagctcgacgggtacaccgag
gatgaaaagacttgggttgtctgccgagcgcaaaagaaggctgagcgcgaagccgaattg
aaggccaagttcgaccaagaacgccgtgaacgcatggaaaagatggcgggcgccaacctc
tacatcaaaaatcttgaggacggcaccgacgatgaaaagcttcgcgaattgttcaaggag
tttggcaccatcacctcttgccgcgtcatgcgtgacgcctcgggcgtttctcgcggttcc
gcgttcgtcgccttctcttctcccgacgaagccacccgcgcggtgacggagatgaacggt
aagatggtcggtgccaagccgctctatgtcgctctcgcgcaacgcaaggaagaacgccgc
atgcgtctccaagcgcaattcgcgcagcgcatgccgggcgccggtatgccgggtggcatg
gctccgtacatgccgccgccgggcgtgccaggtgctcctatgtactacggccaaccgcct
ccggccgggcatgccggccaaggcgttccgggcgcccagcgtggccgtggtggccgaggt
ggcccggccggtggccgtggccagcgtcaaaacatgcgatacaacgccgccgcggctatg
ccgatgccgccgatgccggcggaggcggctaacccgatggctattctcgcttctcagctc
tccgccgccgctccggatcaacagcgcatgattcttggtgaagccctctacccgctcatt
gagagcaaggacgccgccaacgccgcaaagatcacgggtatgttgctcgagatggaccag
tcggaggtccttcacttgatcgagtctccggacgcgctcacctccaaggttcaagaagcc
ctcgctgtgctgaaggctgccgccgaggaaggtgcgtaa
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