Ostreococcus lucimarinus: OSTLU_50593
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Entry
OSTLU_50593 CDS
T01029
Symbol
TAFV3501
Name
(RefSeq) predicted protein
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OSTLU_50593 (TAFV3501)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
olu03021
]
OSTLU_50593 (TAFV3501)
03036 Chromosome and associated proteins [BR:
olu03036
]
OSTLU_50593 (TAFV3501)
Transcription machinery [BR:
olu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
OSTLU_50593 (TAFV3501)
Coactivators
SAGA/TFTC/STAGA complex
OSTLU_50593 (TAFV3501)
Chromosome and associated proteins [BR:
olu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
OSTLU_50593 (TAFV3501)
STAGA complex
OSTLU_50593 (TAFV3501)
TFTC complex
OSTLU_50593 (TAFV3501)
SAGA complex
OSTLU_50593 (TAFV3501)
SLIK complex
OSTLU_50593 (TAFV3501)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
Beta-prop_SCAP
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_EIPR1
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_Nup120_160
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
eIF2A
Beta-prop_HPS5
Beta-prop_WDR11_2nd
WD40_like
AIF_C
Cytochrom_D1
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
5004170
NCBI-ProteinID:
XP_001420161
JGI:
50593
UniProt:
A4S3V7
LinkDB
All DBs
Position
10:complement(join(386953..387048,387169..388926))
Genome browser
AA seq
617 aa
AA seq
DB search
MGADAAISDHLLYHAETETDPRGAASGYATLREWAQNSLDMYKSELCRVLFPMFAHVLLD
LVKKGYAEDAREFYATHHADHMRLYGEDLAALSALSDPEHVLTDPVARKFLDNKVSLKMT
QYSFELLVKFLHAQNLISMLAVLNAHLCVEVLKGEPSPYEDEKEGSVVITGRAPEAQRKF
NSIKGRWGLVDSCLEIERVKQFRKESKEKEKEAAAKAREEAKKSKKQKKEEAAAAEERDA
AGGDEEMEDAPEKKTEAEYPVAMLEDPPNVIKGKVPVPQLDYDAFEEALEDLRWRIRLSK
DVLPTVAFFTFTHAHGLLICADATGDVKHVAGGFSDSVVRVWHLEEEDEDDKDKEIPVDR
DAKTPRSIPMTEFVGHSAPVQQVAFSPCGKFLLSVSRDCHVRVWSMELKICLCAYEGHLH
PIWDVQWSPFGHYFATACHDRVARVYAMDAPFPRRMFVGHLSNVDCVAWHPNCNYVATGS
ADRTVRLWDMFDGECVRVFAGHAAGVRAIVFAPDGRTIASASDDGRICMWDLRRASCVIS
YKGHVGPVYSMDFAGGGNLLVSGGADDTVRVWDATVPADEVEKLKETFPTKNTPVFRVKF
SRRNLCLAMGARRSTKE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcggacgcggcgatcagcgatcacttgctgtaccacgcggagacggagacggat
ccgcgaggcgcggcgagcggatacgcgacgctgcgagagtgggcgcaaaattcgttggat
atgtacaagagtgaactgtgtagggtgctgttcccgatgttcgcgcacgtgttgctggat
ttggtgaagaagggatacgcggaggacgcgcgagagttttacgcgacgcaccacgcggac
cacatgcggctgtacggggaggatttggcggcgttgagcgcgctgagcgatcccgagcac
gtgctcacggacccggtcgcgaggaagtttttggataacaaggtgagcctgaaaatgacg
cagtattcgtttgagttgctggtcaagtttttacacgcgcaaaatctcatctcgatgttg
gcggtgttgaacgcgcacctgtgcgtggaagtgttgaagggcgaaccgagtccgtacgag
gacgagaaagagggttctgtggtcatcaccggacgcgcgcctgaggcgcaacgcaaattt
aacagcatcaagggccgatggggattagtggactcgtgcttggaaatcgagagggtgaag
cagtttagaaaggaatcaaaggaaaaggaaaaagaagcggcggcgaaggcgcgcgaagag
gcgaagaagtcgaagaagcagaagaaggaagaagccgccgccgctgaagaacgagacgcc
gcgggtggggatgaggagatggaggacgcgcccgagaagaaaacggaagccgagtatccg
gtggccatgctcgaagatccgccgaacgtgatcaaaggcaaggtaccggtgccacagctc
gattacgacgcattcgaagaggctttggaggatttgcggtggcgaataaggctttcgaag
gatgtcctacccacggtggcgttcttcacattcacgcacgcgcacggattgttaatctgc
gccgacgccacgggcgacgtcaagcacgtggctggtggcttttcggactctgtcgtgcgc
gtttggcatttagaagaagaagatgaagacgacaaggacaaagagattccggttgatcgc
gacgcaaagacgccgcgatcgattccgatgactgagttcgtcggccacagcgcgcccgtg
caacaagtcgcgtttagcccgtgtggaaagtttttgttatcggtgtcgcgagactgccac
gtgcgcgtgtggagcatggagctgaagatatgtctgtgcgcgtacgaaggtcacctgcat
ccgatttgggacgtgcagtggagtcccttcgggcactacttcgccaccgcgtgtcacgac
cgcgtggcgcgcgtgtacgcgatggacgcgcctttcccgcgtcgtatgttcgtgggtcat
ctttcgaacgtcgattgcgtggcgtggcatccgaactgtaattacgtcgccaccggctcc
gccgatcgcaccgtgcgtctgtgggacatgttcgatggcgaatgcgttcgcgttttcgcc
ggtcacgccgctggtgtgcgcgccatagtattcgcgcccgacggtcgaaccatcgccagc
gcctcggatgacggtcgcatttgcatgtgggatctcaggcgcgcctcgtgcgtgatctcg
tacaaaggtcacgttggtccggtgtattccatggactttgccggcggcggcaatttactc
gtctccggtggtgcggacgacaccgtgcgcgtctgggacgcaaccgtccccgccgacgag
gtagaaaagctaaaagaaacgttcccgaccaagaacaccccggtgttccgcgtcaagttt
tcaaggcgtaacttgtgcttagccatgggcgcccgcagatcgaccaaggaataa
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