Ostreococcus lucimarinus: OSTLU_805
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Entry
OSTLU_805 CDS
T01029
Name
(RefSeq) predicted protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSTLU_805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_805
Enzymes [BR:
olu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OSTLU_805
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
OSTLU_805
mRNA degradation factors
3'-5' decay
Ski complex
OSTLU_805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
Ski2_N
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
5000002
NCBI-ProteinID:
XP_001415858
JGI:
805
UniProt:
A4RR89
LinkDB
All DBs
Position
1:complement(join(<543583..544611,544777..>547272))
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AA seq
1175 aa
AA seq
DB search
AGDSSSLARSPAPQSDFVRGSFSQVPFTPGGEGWDAAARESAAKRMELASRAGKAWLEEF
EAGTYLSASTLPNTLHGMREMFDLDSGMEQMELELEKLTVMDDEELPMSYDDLFIDALRG
AVRPEESSSEEDDTEDETEDETEEDGEAVDEVTLEGEAEVEALLNGTKSIIAARRRSKSR
KKKGETWAVMERFDDVQEAYRREVPEPAHDFPFELDLFQKEAIVHLEKSENVFVAAHTSA
GKTVVAEYAFALATKHCTRAIYTSPIKTISNQKFRDFGKMFDVGLLTGDVSIKPEAACLI
MTTEILRSMLYRGADLIRDVEWVIFDEVHYVNDAERGVVWEEVIIMLPAHVGLILLSATV
PNVFEFADWVGRTKRKKIFVTGTKKRPVPLEHCIYFGGDKEKDFYKVGEHEAFLPTGYKV
ASDAHKKKLLGNKTTTATPANAQAAKQTALAGRGGRGGAQQGRGGRVGGRGGTQNVTGGR
GSSFGPNAGRDKNMWVELIRNLERRELLPMVVFAFSKKRCDTLVDSLTSMDLTSSSEKHE
IHVFCERALSRLSVTDRKLPQVLRVRELLRRGLGVHHAGLLPIVKEIVEMLFCRGLLKVL
YCTETFAMGVNAPARCVCFQSLRKHDGQDFRGLLSGEYTQMAGRAGRRGLDTVGTVILAA
WENFPPELELRQLLSGQATKLQSQFRLTYGMILNLMRVEDLRVEDMLARSFAEFHAQRSV
IDRRGDLAIDTAALRKVESLMQTEAQFSPDEWQKAVHWDDHAREIARSVEHVREAIMTSR
GAQNALSPGRVLLVAPEGEGGESVDGLPRGGVAKHCVLLRVVTSATNGKSFVRGGTTSNK
MPDGLPWFRQAGGIDYIVASVPETAILAITTSRLSVEADAILDGSGDVAATSRALLSMEK
LSSETSFEALHPLKDLKIQDIVTVEACQHHADLVKSLPPRPVASAQKLREWSALLRAKHV
LTSRVAELEFGLSDANLLQMPDFEARVAVLQRMGYLDENRTVTLKGRVACEIATGDELVG
TEIIFAGVLTDIPSEEAVALLAALVFQEKNASPPNLEGSLKAACDRAKELAFAAGEIQMA
HGLPIAPDEFVETTMRFGLSEVVYEWARGTPFADICQLTDVQEGSVVRTIVRLDEMCRDV
RNAARIMGDSTLFAKMEEASAAIKRDIVFSASLYV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
gctggagattcgagttcgttggcgcgttcgcccgcgccgcagagcgatttcgtgcgaggt
tcgtttagtcaagtgccgttcacgccgggaggagaaggatgggacgcagccgcgcgagag
agcgcggcaaagcgtatggagctggcgagtcgcgcgggaaaggcgtggttggaagagttt
gaagcggggacgtatctctcagcgtcgactctaccaaacacgctgcacgggatgcgagaa
atgtttgatttagacagtggcatggagcaaatggagctcgagcttgaaaagctgacagtg
atggacgatgaagagttaccgatgtcgtacgacgatttattcatcgatgcgcttcgcggc
gctgttcgaccggaggaatcatcgagcgaggaggatgacacggaggacgaaacggaggac
gaaacggaagaggacggcgaagcggtcgacgaagtcacgctcgaaggcgaagccgaagtc
gaggcattactgaacggcacaaaatccattattgcggctcgaaggcgaagtaagtcgagg
aagaagaaaggagagacatgggccgtcatggagagatttgacgacgttcaggaagcgtat
agacgcgaggtacccgaaccggcgcacgatttcccattcgaactcgatttatttcagaaa
gaagccatcgtccacttggaaaagtccgagaatgtgttcgttgcagcgcacacttccgcg
ggcaagaccgtggttgcggaatacgcctttgcgctggctacgaaacactgcacgcgcgcc
atctatacgtctccaatcaagacgattagcaaccaaaagtttagagattttgggaagatg
ttcgacgtcggcctgttgacaggtgacgtttccatcaaaccagaagcggcttgtctcatc
atgacgacggaaattttgcggagtatgctgtatcgaggcgcggatctgatacgcgacgtc
gaatgggttatctttgacgaggtgcactacgtaaatgacgccgagagaggtgtcgtgtgg
gaagaggtcatcatcatgcttcccgcgcacgttggtttgattttgttgtctgccacggta
ccaaacgttttcgagtttgctgattgggttggaagaacgaagagaaagaaaatattcgtc
acgggaacgaagaagcgacctgtgccgctcgaacactgcatctacttcggaggcgataag
gagaaggacttttacaaggtcggagagcacgaagcattcttgccgactgggtataaagtc
gcgtcagatgcgcacaaaaagaagctacttggtaacaaaacgacgacggcaacaccagca
aatgcgcaagctgcgaaacaaaccgcgctcgccggacggggcggccgtggtggagcccaa
caagggcgaggaggccgagtgggcgggcgcggaggaacccaaaacgtcaccggtggacga
ggaagctcgtttggacccaacgctgggcgcgataagaatatgtgggtagagctcattcgc
aatcttgaacgtcgagaactactacccatggttgtatttgcgtttagcaagaaacgatgc
gacactctcgtcgacagcctgacgtcgatggatctcacatcaagctctgagaagcacgaa
atccacgtattttgtgaacgcgcgctgagtcgattatccgtcaccgaccgcaagttaccg
caagtccttcgcgtgcgcgaactccttcgtcgaggtctcggcgtgcatcacgctggtcta
ctgccaatcgtcaaggagattgtcgagatgttgttttgtcgtggtttgcttaaagttctc
tattgcacggaaacttttgcgatgggtgtaaacgctccagctcgttgtgtgtgcttccaa
agtctgcgcaaacatgacgggcaagatttcagaggtcttctaagtggtgaatatacgcaa
atggctggccgcgctggacgtcgaggcctcgacacagtcggcaccgtcatcttggcagct
tgggagaactttcctccagaacttgagcttcgtcagttgctgtcgggtcaagcaacgaaa
ttgcagtcacagttccgattgacgtacggcatgattctcaacctcatgcgagtcgaggac
ttgcgcgtcgaggatatgctcgcgcgctcgtttgccgaattccatgcacagcgcagcgtc
atagatcgacgaggcgatctcgctatcgacaccgctgctcttcgcaaagtagagtcgctc
atgcaaactgaagcgcagttttcaccggatgaatggcagaaagccgttcattgggacgac
catgcgagagagattgcacgaagcgtggagcacgtgagagaagccatcatgacgagtcga
ggggcgcaaaacgcactcagcccgggaagggtcttgctcgtcgctcctgaaggcgaggga
ggtgagagtgtggacggactaccaagaggtggtgtcgcaaaacattgcgtgctcctgcgc
gtggtgacttctgcgacgaatggaaagtctttcgtgcgcggtggcacgacctcaaataaa
atgcccgacggccttccgtggtttcgacaagcgggcggcatcgattacattgtcgcgagc
gttcctgagaccgcgatactcgctatcacgactagtcggttgagcgtagaagcggacgca
atactagatggtagtggtgacgtagcggcgacttctcgagcgctcctatcgatggagaaa
ttgtcgagtgagacctcgtttgaagctctccacccgctcaaggatttgaagatacaagac
atcgtcaccgtggaagcttgtcagcatcacgccgacttggtgaagagcttgcccccgaga
ccggtcgcatcggcgcagaaacttcgtgaatggtcggcgttgctgcgagcaaaacatgtt
ctcacttctcgtgtcgccgagctggagttcggattgtcagacgcaaacttgctccaaatg
cccgattttgaagcgcgcgtcgctgtgctccagcgcatgggctatctcgacgaaaacagg
acggtgacgttgaaaggtcgcgtggcgtgtgaaattgccactggggacgagctcgtcgga
acagaaattatatttgcgggcgtgctcacggatataccttcagaggaagccgtggcgctt
ctcgcggcgctcgtctttcaagaaaagaatgcttccccgcccaacctcgaaggctcgctc
aaagcggcgtgtgatcgcgcgaaagagctagcgtttgccgccggcgagatacagatggca
catggtctaccgattgcgcctgatgaattcgtagagacgaccatgcgctttggtttatcc
gaagtcgtctacgagtgggcgcgcggcacgccgttcgcggacatctgtcagctcaccgac
gtgcaagagggaagcgtcgttcgcaccatcgttcgactcgatgaaatgtgccgcgacgtg
aggaacgcggcgagaatcatgggcgatagcaccttgttcgcgaaaatggaagaagcgagc
gcggcgattaaacgcgacattgtcttcagcgcgtcgctctacgtc
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