Ostreococcus lucimarinus: OSTLU_87146
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Entry
OSTLU_87146 CDS
T01029
Name
(RefSeq) predicted protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
olu
Ostreococcus lucimarinus
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_87146
03041 Spliceosome [BR:
olu03041
]
OSTLU_87146
03036 Chromosome and associated proteins [BR:
olu03036
]
OSTLU_87146
Enzymes [BR:
olu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OSTLU_87146
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
OSTLU_87146
mRNA cycle factors
Common to processing body (P body) and stress granule
OSTLU_87146
Spliceosome [BR:
olu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
OSTLU_87146
Chromosome and associated proteins [BR:
olu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
OSTLU_87146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
GRP
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
5001585
NCBI-ProteinID:
XP_001417385
JGI:
87146
UniProt:
A4RWT1
LinkDB
All DBs
Position
4:889813..891255
Genome browser
AA seq
480 aa
AA seq
DB search
MEEEEAAAARNDPDSEATKMFTGENTGLDFDLYDDIPVETSGRDVPEPITSFVDLDLGAA
VNTNIKRCKFKNPTPVQKYAIPASLAGRDLMACAQTGSGKTAAFCFPIIAGILKRGLQGG
HMNRKTYPLALVLSPTRELASQIHEESRKFAYQTGVASCVIYGGAPAVEQFRAMERGCDI
LVATPGRLIDLIDRAKISLSRVQYLALDEADRMLDMGFEPQIRQIVDERDMPRCGERQTM
LFSATFPREIQRMASDFLDDYVFLTVGRVGSSHALITQSVERVTSYHEKSNMLLDLVEAV
PGLTLVFVETKRGADQLEDFLYQNGKPATSIHGDRTQQEREAALKSFRAGKTPILVATDV
AARGLDIPHVTHVINFDLPSDIDDYTHRIGRTGRAGKKGRATALFLESKDGQMARPLTEL
MSEANQEVPTWLTQISGHSFGGGGRRRGGGGGNRFGGRDYRGGGGGGGGGGGGGGGWGRE
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggaagaagcggcggcggcgagaaacgatcctgactccgaggcgacgaagatg
tttaccggcgaaaacaccggtttggactttgacctgtacgacgacattcccgtggagacg
agcggacgcgacgtgccggagcccatcacttcgttcgtcgacctcgacctcggggcggcc
gtgaacacgaacatcaagagatgcaagtttaagaatccgacgccggtgcaaaagtacgcc
attccagcttcgctggcgggaagagatttaatggcgtgcgcgcagacgggttccggtaaa
acggcggcgttttgctttcccatcatcgccggtatcttgaagcgcggtcttcaaggcggt
catatgaaccgcaagacgtatcctctcgcgctcgtgctttcgccgacgcgcgaattggcg
agccagattcacgaagaatcgcggaagttcgcgtaccaaaccggcgtcgcctcgtgcgtc
atctacggtggcgctccggcggtggaacaattccgcgccatggaacgcgggtgcgacatt
ctcgtcgccacgccgggtcgtttgatcgatctcatcgatcgcgctaagatctcgttgagc
agagttcaatatctcgcgctcgacgaggcggatcgcatgttggatatgggtttcgagccg
caaattcgacaaatcgtcgacgagcgcgacatgccgcgatgtggcgagcgtcaaacgatg
ttgttctccgcaacgttcccgagggaaatccagcgaatggcttcggacttcttggacgat
tacgtctttctcacggtcggtcgcgtcggctcttcgcacgcgttgatcacgcaatccgtc
gagcgcgtgacttcgtaccacgaaaagagcaatatgcttctcgatttggtcgaagccgtg
ccgggtttgactttggttttcgtcgaaacgaagcgaggtgcggaccagctcgaggatttc
ttgtaccaaaacggtaagcccgcgacgagcatccacggcgatcgcacgcagcaggagcgc
gaggcggcgttgaaatccttccgagcgggtaagacgcccatcctcgtcgccacggacgtc
gcggcgagaggtttggatattcctcacgtcacccacgtcatcaactttgacttgccatcg
gatatcgacgactacacgcaccgcatcggtcgtaccgggcgcgcggggaagaagggtcgg
gcgacggcgctgtttttagaatccaaagacggccaaatggctcgcccgttgacggagctc
atgagcgaggcgaaccaggaagtgccgacgtggttgacgcaaatctctggccattccttc
ggcggtggtggacgtcgtcgcggtggtggtggcgggaatagattcggcggtcgcgactac
cgcggcggcggcggcggcggcggcggcggcggcggcggcggcggcggctggggccgcgag
taa
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