Oleiharenicola sp. Vm1: ACMYLB_05100
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Entry
ACMYLB_05100 CDS
T11510
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
olv Oleiharenicola sp. Vm1
Pathway
olv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACMYLB_05100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olv03019
]
ACMYLB_05100
Enzymes [BR:
olv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACMYLB_05100
Messenger RNA biogenesis [BR:
olv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACMYLB_05100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
XOM10556
LinkDB
All DBs
Position
937270..938814
Genome browser
AA seq
514 aa
AA seq
DB search
MLRKLLSKIKDTFKAGGKSAESKPAHAPRPHSAKPAAKGGPRHERAERGAPGGHGHGHSH
GGGKSHGRGHERSGRGGRGGRGERPEFAERTPPAPRAPRHEEPAKPLPEVPKMETAFSAL
GLNDRLAYAVQQMGYENPTPIQAQAIPEILSGKDVIGSAQTGTGKTAAFALPILHRLERR
GALRCLILEPTRELAVQVEEAFKNFSKFTDLRVTVVYGGVGYGKQREDLARGVDVLAATP
GRLLDYLEQGEVRLDQVDVLVLDEVDRMLDMGFLPDVKRIVAKVPKARQTLFFTATLPPE
IEQLAAWALRDPFKISVSRERSTAETITHAFYPVVQAQKFELLAHLLEQTQYHSVIIFSR
TKSGADYVANRLKHAGHTCAVMHADRSQQERMDALKGFKSGKYEVLVATDLVARGLDIAD
VSHVINFDVPENPEDYVHRIGRTGRAQKTGDAFTLVTEETWRDARSIERFIGQSIEWKKV
EGFNYTYSGIFDGGGMPQAAPEKPKSRLMRGGRR
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgctccgcaagctcctctcgaagatcaaagacacgtttaaggccggtggtaagtccgcc
gagtccaagcccgcgcacgcccctcgtccgcactcggcgaagccggccgccaagggcggc
ccacgccacgaacgcgccgagcgcggcgcgccgggcggccacggccacggccacagccac
ggcggcggcaagtcgcacggccgcggccacgagcgctccggccggggcggtcgcggcggt
cgcggcgagcgccccgagttcgccgagcgcacgccgcccgcgcctcgcgctccgcgccac
gaggagccggccaagccgttgcccgaggtgccgaagatggaaacggcgttcagcgcgctc
ggcctgaatgatcgcctcgcctacgccgtgcagcagatgggctacgagaacccgaccccg
atccaggcccaggcgatcccggagattctctccggcaaggacgtcatcggctccgcccag
accggcacgggcaagaccgcggccttcgcgctgccgatcctgcaccgcctcgagcgccgc
ggcgcgctgcgctgcctcatcctcgagcccacgcgcgagctcgccgtgcaggtcgaggag
gccttcaagaatttctccaagttcaccgacctccgcgtgaccgtcgtctacggcggcgtc
ggctacggcaagcagcgcgaggacctcgcgcgcggcgtcgacgtcctcgcggccacgccc
ggccgcctgctggactaccttgagcagggcgaggtccgcctcgaccaggtcgacgtgctc
gtgctcgacgaggtcgaccgcatgctcgacatgggcttcctgcccgacgtgaagcgcatc
gtcgccaaggtgccgaaggcccgccagacgctcttcttcaccgccacgctgccgcccgag
atcgagcagctcgccgcctgggcgctgcgcgatccattcaagatctccgtcagccgcgag
cgctccaccgccgagacgatcacgcacgcgttctatcccgtggtgcaggcgcagaagttc
gagctgctcgcgcacctgctcgagcagacgcagtatcactccgtgatcatcttctcgcgc
accaagagcggcgccgactacgtcgccaaccgcctcaagcacgccggccacacctgcgcc
gtcatgcacgccgaccgctcccagcaggagcgcatggacgcgctgaagggcttcaagtcc
ggcaaatacgaggtgctcgtcgccaccgacctcgtggcccgcggcctcgacatcgccgac
gtgtcgcacgtgatcaacttcgacgtcccggagaatcccgaggactacgtccaccgtatc
ggccgcaccggtcgcgcgcagaagaccggcgacgcgttcacgctcgtcaccgaggagacc
tggcgcgacgcgcgcagcatcgagcgcttcatcggccagagcatcgagtggaagaaggtc
gagggcttcaactacacctactcgggcatcttcgacggcggcggcatgccgcaggccgcg
cccgagaagccgaagagccgcctgatgcgcggcggccgccgctga
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