Oleiharenicola sp. Vm1: ACMYLB_13375
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Entry
ACMYLB_13375 CDS
T11510
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
olv Oleiharenicola sp. Vm1
Pathway
olv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACMYLB_13375 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
olv03021
]
ACMYLB_13375 (rho)
03019 Messenger RNA biogenesis [BR:
olv03019
]
ACMYLB_13375 (rho)
Transcription machinery [BR:
olv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACMYLB_13375 (rho)
Messenger RNA biogenesis [BR:
olv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACMYLB_13375 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
Spore_III_AA
AAA_22
AAA_28
AAA_24
Motif
Other DBs
NCBI-ProteinID:
XOM08176
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Position
2744613..2745800
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AA seq
395 aa
AA seq
DB search
MEKDQQPGASASQAPEQNPAAQPPQQPDNSIRVEGILDLDNSRNGQLLDLARFGKRRPTD
PFVPRELIRRFKLNQGSMITAQATPDPRFPNPKVRFIEKVDGMELDERRRVVEFPNLLTI
TPNEHLKLEMKDGRMTTRVVDLFCPIGKGTRGLIVAPPRTGKTTMLRDMALGVLENSPEC
HVMILLVDERPEEVTDFKRSVPAEVWASSNDEAVENHIRISELCIERAKRLVEAGKDVVL
FVDSLTRLSRAYNTQRNSGRTGSGGLDVRALEKPRQLFASARNTEDGGSLTIIASILVET
GSRMDDVIFQEFKGTGNMELVLDRKAAEMRIWPAVNVQSSGTRKEELLLDEKTLEGIHFF
RRALVQQKIEEATDTMITRLSKTKNNAEFLKLIAR
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaccaacagcccggcgcgtccgcgtcgcaggctcctgaacagaatccggcc
gcgcagcccccgcaacagccggacaattcaattcgcgtcgaaggcattctcgacctcgac
aacagccgcaacggccagctgctcgacctcgcccgcttcggcaaacgccggcccacggac
ccgttcgtgccgcgcgaactcatccgccgcttcaagctcaaccagggctcgatgatcacc
gcgcaggcgacgcccgacccgcgcttccccaaccccaaggtccgcttcatcgagaaagtc
gacggcatggagctggacgagcgccgccgcgtcgtcgagttccccaatcttctcaccatc
accccgaacgagcacctcaagctcgagatgaaggacggccgcatgaccacgcgcgtcgtc
gacctcttctgccccatcggcaagggcacgcgcggcctcatcgtcgccccgccccgcacc
ggcaagaccacgatgctccgcgacatggcgctcggcgtcctcgagaacagccccgaatgc
cacgtcatgatcctcctcgtcgacgagcgccccgaggaagtcaccgacttcaagcgcagc
gtccccgccgaggtctgggcctcgtcgaacgacgaggcggtcgaaaaccacatccgcatc
tccgaactctgcatcgagcgcgcgaagcgcctcgtcgaggccggcaaggacgtcgtgctt
ttcgtcgactccctgacccgcctttcccgcgcctacaacacccagcgcaattccggccgc
accggctcgggcggcctggacgtgcgcgccctggaaaaaccccgccagctcttcgcctcc
gcccgcaacaccgaggacggcggctcgctcaccatcatcgcctccatcctggtcgagacc
ggctcgcgcatggacgacgtcattttccaggagttcaagggcaccggcaacatggagctc
gtcctcgaccgcaaggccgccgagatgcgcatctggcccgccgtgaacgtccagtcctcc
ggcacccgcaaggaggaactcctcctcgacgaaaagaccctcgaaggcatccacttcttc
cgccgcgccctcgtgcagcagaagatcgaggaagccaccgacacgatgatcacccgtctc
tccaagacgaaaaacaacgccgaattcctcaagctcatcgcccgctga
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