Oenanthe melanoleuca (Eastern black-eared wheatear): 130248763
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Entry
130248763 CDS
T09236
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03015
mRNA surveillance pathway
oma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130248763 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
130248763 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oma03019
]
130248763 (PABPC1)
03041 Spliceosome [BR:
oma03041
]
130248763 (PABPC1)
Messenger RNA biogenesis [BR:
oma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130248763 (PABPC1)
mRNA cycle factors
Stress granule specific factors
130248763 (PABPC1)
Spliceosome [BR:
oma03041
]
Complex C
Other components
Complex C specific factors
130248763 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
130248763
NCBI-ProteinID:
XP_056338748
LinkDB
All DBs
Position
2:20941197..20956620
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AA seq
637 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPTNQLAQLARPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMST
QRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHV
QGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLES
PESLRSKVDEAVAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggacctgcacccc
gacgtgaccgaggccatgctctacgagaagttcagccccgccgggcccatcctctccatc
cgcgtctgcagggacatgatcacccgccgctcgctcggatacgcctatgtcaacttccag
cagcccgccgacgctgaacgagctttggacaccatgaactttgatgtcattaaaggcaaa
ccagtgcgcatcatgtggtctcagcgcgatccatctctacgcaaaagcggtgtaggaaac
atcttcatcaaaaacttggacaaatcaattgataacaaagctttgtatgacacattttct
gcttttgggaacatcctgtcttgtaaggtggtgtgtgatgaaaatggatccaagggttat
ggatttgtacattttgagacacaagaagctgcagaaagagctattgaaaaaatgaatggt
atgctgcttaatgaccgcaaagtatttgttggaaggtttaaatcccgcaaggaacgtgag
gcagagcttggagccagagcaaaagaattcaccaatgtttacatcaaaaattttggagaa
gacatggatgatgagagacttaaggaactctttggcaagtttggtcctgctctaagtgtg
aaagttatgactgatgagagtggaaaatccaaaggctttggcttcgttagttttgaaaga
catgaagatgcccaaaaagctgtagatgagatgaatggaaaagagctcaatggaaaacaa
atctatgttggccgggctcagaaaaaggtggaaagacagacggagctgaagcgcaagttt
gaacaaatgaagcaggacaggatcaccagataccagggtgtaaacctttatgtgaaaaat
cttgatgatgggatcgatgatgagcgtctccgaaaagagttctccccatttggtacaatc
actagtgcaaaggtgatgatggaaggtggccgcagcaaaggatttggatttgtatgcttt
tcgtcaccagaagaagccaccaaagcagtcacagaaatgaatggtagaattgtggctact
aaaccattatatgtagctctagcccaacgtaaagaggagcgccaagctcatctcaccaac
cagtacatgcagaggatggcaagtgtaagagcagtacctaatcctgtaatcaacccctac
cagccagcacctccttcaggatacttcatggcagctattcctcagactcagaaccgtgct
gcgtactatcctactaatcagctcgctcaacttgctagacctagtcctcgctggactgct
cagggtgccagacctcatccattccaaaatatgcctggtgctatccgcccagcagcaccc
agaccacccttcagtaccatgagaccagcttcttcccaggttccacgagtcatgtcaacg
cagcgtgttgctaatacatcaacacaaacgatgggtccacgtcctgcagcagcagctact
gcagccactcctgccgtgcgcacagtcccacagtacaaatacgctgcgggggttcgcaat
ccccagcagcacctcaacacgcagccgcaggttgctatgcagcagcctgctgtccatgtg
caaggtcaggaacccttgactgcttccatgttggcttctgctcctccacaagaacaaaag
cagatgttaggtgaacgtctattcccccttattcaaagcatgcaccctactctggcgggt
aagatcactggtatgttgttggagattgacaactctgaactcctccacatgctcgagtct
cctgagtctcttcgttcgaaggttgatgaagctgtagccgtactacaagcccaccaagct
aaagaggctgctcaaaaggcagttaataatcccactggggttccaagtgtttaa
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