Oenanthe melanoleuca (Eastern black-eared wheatear): 130250329
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Entry
130250329 CDS
T09236
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03013
Nucleocytoplasmic transport
oma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130250329 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
130250329 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oma03019
]
130250329 (THOC1)
03041 Spliceosome [BR:
oma03041
]
130250329 (THOC1)
Messenger RNA biogenesis [BR:
oma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
130250329 (THOC1)
Spliceosome [BR:
oma03041
]
Complex C
Other components
EJC/TREX
130250329 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130250329 (THOC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
Motif
Other DBs
NCBI-GeneID:
130250329
NCBI-ProteinID:
XP_056341857
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All DBs
Position
2:complement(47149517..47171677)
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AA seq
680 aa
AA seq
DB search
MASSARARSAARPPGNMSPPLFSLPEARLRFTTSTREALINKSIKPLLNAFNQVPGSENE
KKCTLDQAFRVVVEEEIINKAPCENLLAIISLAINGVTEGICTASTPFVLLGDVLDCLPL
DQCDKIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARL
FPLSEKSGLNLQSQFNLENVTVFNTNEHESTLGQKHTEEREEGMDVEEGEMGDDEAPTSC
SIPIDYNLYRKFWSLQDYFRNPVQCYEKVSWKTFLKYSEEVLAVFKSYKLDDTQASRKKL
EELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLT
DEQSLWIEDTTKAVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERSHP
EFQLGPPDSKPMRPVRKRPAPEDFLGKGSSKKILMGNEELTRLWNLCPDNMEACKSESRE
YMPTLEEFFEEAIEQADPENMVENKYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSL
PEYLENMVIKLAKELPPPSEEIKTGEDEDEEDNDALLKENNESPEVQRDKAMTGEQIESF
ANRLGEQWKALAPYLEMKESDIRQIELDSEDVKMRAKQLLVAWQDQEGAHATPENLITAL
SKAGLGDLAESFTNDTEGSS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcatcggcgcgcgcccgcagcgccgcccgcccgcccgggaacatgtcgccgccg
ctcttcagcctgcccgaggcgcggctccgcttcacgacatccaccagagaggctctgata
aacaaaagcatcaagccgttgttgaatgcatttaaccaagttcctggaagtgaaaatgaa
aagaagtgtaccttggatcaagcttttagagttgttgtagaagaagaaataataaacaaa
gctccatgtgagaatctcctggcaattatctctcttgctattaatggagtcacagaaggt
atctgcactgcatcaactccttttgtgcttttgggggatgttctggattgcctccctttg
gatcagtgtgacaaaattttcacttttgtggagaaaaatgttgctacgtggaaatcgaac
acattttactctgcagggaaaaattacttgctacgcatgtgcaatgacctcctaagaaga
ttatctaagtcacaaaacacagttttttgtggaagaattcagctattcttggctaggtta
tttccactttcagaaaagtcagggcttaacctacagagccagtttaacttggagaatgtc
actgttttcaataccaatgaacatgagagcactctgggacagaagcacactgaggagagg
gaagaaggtatggatgtggaagaaggtgaaatgggagatgatgaagcaccgacaagctgt
tccattccaatagattataacctgtatagaaaattctggtcacttcaagattattttaga
aatcctgtgcagtgctatgagaaggtgtcatggaaaacctttcttaagtactcagaagaa
gttttggctgttttcaaaagttacaaattggatgacactcaggcttcccgaaaaaagttg
gaagaactaaaaacaggaggagaacatgtatattttgcaaagttcctaaccagtgaaaag
ctgatggatttacaactgagtgacagtaatttccgccgtcacatcttgttgcagtaccta
atactatttcagtatctaaagggacaagtcaaatttaaaagttcaaactacgttctaaca
gatgaacagtctctttggattgaagatactacaaaagcagtttaccagcttctttcagaa
aatcctccagatggagaaagattctctaaaatggtagagcatatattaaatactgaagaa
aactggaactcatggaaaaatgagggctgcccaagctttgtgaaagaaagatctcatcca
gagtttcagcttggacctcctgattcaaagccaatgagacctgtgaggaagaggccagct
ccagaggacttcctaggaaaaggatcaagcaaaaaaatccttatggggaatgaggaactg
acccgcctttggaatttatgtcctgataacatggaagcctgtaaatctgagagtagggaa
tatatgccaacactggaggaattttttgaggaagctattgaacaagcagaccctgaaaac
atggttgaaaataagtataaggctgtgaacaattctaactatggctggagagcactgagg
cttctggcacgcagaagtccccacttcttccagccaacaaaccaacaattcaagagttta
cctgaatatctagaaaacatggtaatcaaattagccaaggagctgcctcctccttctgaa
gaaataaaaacaggtgaagatgaagatgaggaagataatgatgctttattaaaggaaaac
aatgaaagtccggaggtgcagcgggacaaagccatgacgggcgagcagatcgagtccttt
gccaacaggctgggggagcagtggaaggccttggccccctacctggagatgaaggagtct
gacatccggcagatcgagctggacagcgaggacgtgaagatgagagccaagcagctgctg
gtggcctggcaggaccaggagggcgcccacgccacccccgagaacctgatcacggcgctg
agcaaagccggcctcggggacctggccgagagcttcaccaacgacaccgaaggcagcagc
taa
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