Oenanthe melanoleuca (Eastern black-eared wheatear): 130250740
Help
Entry
130250740 CDS
T09236
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03008
Ribosome biogenesis in eukaryotes
oma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130250740 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
130250740 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oma03021
]
130250740 (XRN2)
03019 Messenger RNA biogenesis [BR:
oma03019
]
130250740 (XRN2)
03009 Ribosome biogenesis [BR:
oma03009
]
130250740 (XRN2)
03016 Transfer RNA biogenesis [BR:
oma03016
]
130250740 (XRN2)
Transcription machinery [BR:
oma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130250740 (XRN2)
Messenger RNA biogenesis [BR:
oma03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
130250740 (XRN2)
Ribosome biogenesis [BR:
oma03009
]
Eukaryotic type
Pre-60S particles
RNases
130250740 (XRN2)
Transfer RNA biogenesis [BR:
oma03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
130250740 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
130250740
NCBI-ProteinID:
XP_056342738
LinkDB
All DBs
Position
3:98070684..98099391
Genome browser
AA seq
947 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCIEEKAKECNGVKVPIDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAEEKQKIRQEILAKGGFLPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAE
RLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADTVPVSEQE
FIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKE
KRKRLKRDQPSFIPGGQFSPQALGNRSSPQAISNPRQAAFEMRMHQNSTTAASPNTSLTP
DGSPSLGGGIKRKCEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQSY
VEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMGVF
PAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAAL
EEVYPDLTPEESRRNSLGGDVLFVGKHHPLCDFIVEQYRSKSTEAVDIPPELCHGIQGKL
TLNDNAVLPDQVVESPVPMLKDLTQNSAVSISFKDPQFAEDFVFKATVLPGAKKPAPVLK
PGDWEKTNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHSVGRERAMPGMYPSAVPLAAY
GSPYARPLMGSQQQIPKLLPNLRPQESWRGPTPLFQQTPQRTAGAAPLLAWNRMVPSPNQ
FQAAQYQGLGPMAYPQRPEERLDRGRQAYGPGRPYPLPHPAGRYSWN
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccggccttcttccgctggctcagccgcaagtacccctccatcatcgtcaac
tgcatcgaggagaaggccaaggagtgcaatggtgtcaaggtccccatcgacaccagcaaa
cccaaccccaacgaggtggagtttgacaacctctacctggacatgaacggcatcattcac
ccctgcacacacccagaggacaagccagcacccaaaaacgaagacgagatgatggtggcg
atttttgagtacatcgacaggatcttcaacattgtgaggccaaggagactcctctacatg
gccatagatggagtggccccacgtgccaaaatgaatcaacagcggtccaggagattcaga
gcctccaaggagggcatggaagctgctgaagagaagcaaaaaatccgacaggaaattctg
gccaaaggtggcttcctgcccccagaggaggtgaaggagaggtttgacagcaactgcatc
accccgggcacggagttcatggacaaccttgccaagtgcctgcgctattacatcgctgag
cgcctgaacagcgacccgggctggaagaacctgactgttattttatcagatgccagtgct
cctggtgaaggggagcataaaatcatggattacatcaggagacaaagagctcaaccaaac
cacgacccaaacactcaccactgtctgtgtggggctgatgctgatctgatcatgcttggc
ttagctacacatgaaccaaacttcaccatcatcagggaagagttcaaaccaaacaaaccc
aagccatgtgctctctgtaaccagatggggcatgaggttaaggattgccaaggtctgccc
agggagaaacaaggaaagcacgaccagtttgccgacaccgtgccggtctcggagcaagag
ttcatcttcatccgcctgtgtgtcctgagagagtacctggagagagagctcaccatggcc
agcttgcctttcacttttgattttgaaaggagcgtggatgactgggtcttcatgtgcttc
tttgtggggaatgacttcctccctcacctgccatctctggagatcagggagggagccatc
gatcgcttggttaacatctataaaaacgtggtgcacaaaaccgggggctacctgactgag
agtggctttgtgaacctgcagcgggtccagatgatcatgctggctgttggggaggttgaa
gacagcattttcaagaagaggaaggacgacgatgataactttaaaagaagacaaaaggaa
aaaaggaagagattgaagagggatcagccttcctttatccctggtggccagttctcccct
caggccctgggaaatcgatccagccctcaggcaatctctaaccctcgacaagctgccttt
gagatgaggatgcaccagaactctacaactgcagcatctccaaacaccagcctgactccc
gatggcagcccgtccctgggaggaggaatcaagaggaaatgtgaggacagtgacagtgaa
cctgagccagaggataatatcaggctgtgggaaacgggctggaagcagcgctactacaag
aacaaattcgacgtggacgcctccgacgagaagttccgccgcaaggtcgtgcagtcctac
gtggaagggctttgctgggtcctcagatattattaccagggctgtgcctcctggaactgg
tactaccccttccactacgcgcccttcgcctcggacttcgagggcatcgcggacatgcct
tccgactttgagaagggctccaaaccgttcaagcccctggagcagctgatgggcgtgttc
ccggccgccagcgggaatttcctgccgcccacctggaggaagctgatgacggacccggaa
tcaagcatcattgacttctaccctgaagattttgctattgatttgaatgggaagaagtat
gcttggcaaggtgtggctttgttgccctttgtggatgagagacgcctcagagctgccctg
gaggaagtgtaccctgacctgactcctgaggagagcaggaggaacagcctgggcggcgac
gttctctttgtgggcaagcaccatcccctgtgtgacttcatcgtggagcagtacaggagc
aagagcactgaggcagtggacatccctccagagctgtgccacggcatccaggggaagctc
accctgaacgacaacgccgtcctcccggaccaggtggtggagtctcctgttcccatgctg
aaggatctgacccagaactctgcagtcagcatctcattcaaagacccacagtttgctgaa
gactttgttttcaaggctacagtgttacctggggcaaagaaacctgctccagtcctgaag
ccaggggactgggagaaaaccaacaatgatggcaggccttggagaccacagctgggcttt
aacagggacaggaaaccagtgcatttggaccagtcagcattcagaaccttggggcactcg
gtgggcagggagagggccatgccagggatgtaccccagcgccgtgccgctcgcagcctac
ggcagcccctacgcccggcccctcatgggcagccagcagcagatccccaagctgctccca
aatctcaggccccaggagtcctggcgaggccccacgcccctgttccagcagacaccacaa
aggaccgctggtgctgctcctctgctggcctggaaccgcatggtgccgtccccaaaccag
ttccaggcagcccagtaccagggcctggggcccatggcgtacccacagcgacctgaggag
cgcctggacaggggcaggcaggcatatggccctgggaggccctaccctctcccacatccc
gcaggaaggtacagctggaattag
DBGET
integrated database retrieval system
