Oenanthe melanoleuca (Eastern black-eared wheatear): 130251016
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Entry
130251016 CDS
T09236
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oma03021
]
130251016 (SCAF8)
03041 Spliceosome [BR:
oma03041
]
130251016 (SCAF8)
Transcription machinery [BR:
oma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130251016 (SCAF8)
Spliceosome [BR:
oma03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
130251016 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
130251016
NCBI-ProteinID:
XP_056343293
LinkDB
All DBs
Position
3:56764249..56845892
Genome browser
AA seq
1358 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVAQSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQNEEPKKETPSSQLPLVPESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPPKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
ANVDDSMDIQQQDMDIDEGQDIAEEEIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEW
ETARSSEAAKENTQTTQSATVDKSTVITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFP
VTMSVPPPGYSPIPPPPFLRASFNPSQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLV
QPPLPIAQETMKDVPFTGLVLPVGTVTSNLATPTLSAGSVFNPLPINKPESDDKGSHLTD
LQISSSENNRSVQSDVSSSSGLVGGVQPPSVSSNSGLTGEGPPSTVSSSSGLAGGVQPPS
VSSSSGLVGGVQPPTVSSNSALAGGMQLPAVSSSSSLAGGIQPTNASSSSGLMAGGPPPN
VSSSSGLLAGVHPPGVSSSPGLLTGMQPPSVSSSSGVLAGVQPPSVSSNSGLLMMPPPNV
STSSGLMGVPPPNISSNSGHLAMQHPAAVPNMPHLNISNQRMPGLPLIDIRPGLMPHSPG
PRFPLMQPGMPPQRSIPPPAILDPSLHPPPPRGPFPPGDIFNQTERPFGTPGRQNIDNIS
NPEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDSVGRPPVDPREGLGRPPV
DGREHFPRPHIDMRENFGRPGIDNLGRREHFGFNSDKHWGQRGDYDEREHHAFPIYGGPK
GFHEDRERFRHVNYRFDSRSGPGWNRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREI
NGNRFGRDRMPNNWIPPPHPRVFEYFDGATSQRKADNMPQVNGENTETESQPPTAQVQDD
PELYEKLTSSVEINKEKSDTEADIENEPVVESTETEGT
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaagcctttaacagcgagttgtactcgctaaatgattataagccaccc
atttctaaagctaaaatgacacagatcaccaaggcagcaatcaaggctataaagttctac
aagcatgttgtgcagagtgttgagaaattcattcaaaagtgtaaaccggagtacaaggtg
cctggtctgtatgtcattgactccattgtgaggcagtcccggcatcagtttggacaagaa
aaggatgtatttgcaccaagattcagcaataacatcatcagcactttccagaacttgtac
cgttgtcctggtgatgacaagagtaaaattgttagagtgctaaatttatggcagaagaat
aatgtgttcaagagtgaaattattcagcctctcttggatatggcagcaggaattcctcct
cccgttgtgacccctgtcttgcccagcactacagctgctatgagcaacaatacgccaggt
acacctgtgactccagttaccccagccaatgtggcacagagtttacctgatccttgggta
tctcagattgctaacacagacacccttgctgctgttgcccagattttacagagtcctcaa
ggccaacagcttcagcagttgatacagacactgcagatacagcagcagaaacctcagcct
tcgcttcttcaagccctggatgccggtcttgtcgtccagttacaggccctcacagcccaa
ctcacagctgcagctgctgctgctaacacacttaatccactggaacagagtgtctctttt
aataagaagctgatggacaggtttgactttggagaagaatctgaacaaaatgaagagcct
aaaaaggaaactccctcttcccaattgccattagtaccggaatccgtgaacaactcactt
tttcaccaactagctgaacagctacaacagcaaaatttagaacatctcagacaacagctt
ctggagcagcagcagcctccaaaggcgagtcctgaggagaatcaagaaggaaattttggc
tcagagcactctgcatcaccatcacaagggagtagtcaacagcagtttttagaagtggaa
gcaaatgtagatgattcaatggatattcaacaacaggatatggatatagatgaaggtcag
gatattgctgaagaagagatttttgaacaagaagaaaagaaatcagctgttcgttcaaga
tcaagaactcgttcaagatctcgttcaaggtcaccaagaaaacgaaggtctagatcacgg
tctggttctcgtaagcggaaacacagaaaacgttcacgctcgagatcaagagaaaggaag
agaaagtcatctcggtcatactccagtgaaagaagggctagggaaagggaaaaagaacgt
cagaaaaagggattgcctcctatacggtcaaaaacactaagcgtttgcagtactactctt
tgggtgggtcaagtagacaagaaggctacacagcaagatttaacgaacttgtttgaagaa
tttggacaaatagagtcaattaatatgattcccccaagaggatgtgcatatgtctgtatg
gtgcatagacaagatgcatatcgtgctcttcagaaacttagttctgggtcatataaaatt
ggatctaaaattattaagattgcttgggcattgaataaaggtgtgaaaacagaatacaag
caattctgggatgtggatctgggagtttcctatattccatgggagaaagtgaaattggat
gatttggagggctttgctgaaggtggcatgattgaccaggaaacagttaatacagagtgg
gaaacagccagaagctcagaagctgctaaagaaaatactcaaacaacgcagagtgctacg
gttgataagagtaccgttattacaacacagacagaagcttacacacaaccagtcactatg
ctgcagattccagtagctccagctgtgcctgctgttagcttggttccacctgcgtttcct
gtcacaatgtctgtccctcctcctggttatagtccaattcctcctccacccttcttgaga
gcaagtttcaacccttcacagccacctccaggttatatgcctcctccagttccacctgtt
gtcccaccacctgttgtcccaccacctgttgtcccaccagttgttccaacacctttagta
cagcctccattaccaattgcacaagagacgatgaaggatgttccttttactggccttgtt
ctaccagttggtacagttactagcaatctagctactccaacattgtctgctggaagtgtt
tttaatcccctgccaatcaacaaaccagaatcagatgacaaagggtcacatcttacagac
cttcagatttcttccagtgaaaacaacagatctgtgcaaagtgatgtctcgagtagctct
ggccttgttggaggagtgcagccacccagtgtctcaagcaattctgggcttactggagaa
gggcccccatccactgtctcaagcagctctggacttgcagggggagtacagccacccagt
gtttcaagcagctctggacttgtaggaggagtgcaaccaccaactgtttccagcaattct
gctcttgcaggaggaatgcagctacctgctgtctccagtagctcttcccttgctggcggg
attcagccaactaatgcctcaagtagctctggacttatggctggagggccaccaccaaat
gtctcaagtagctcagggcttctagctggagttcatccacccggtgtctcaagcagccct
ggccttctgacaggaatgcagccacccagtgtgtccagcagctcaggagttctggcagga
gtacagccaccgagtgtttcaagcaactctgggcttctcatgatgccaccacctaatgtt
tcaactagttctggacttatgggagtgccaccaccaaatatttcaagtaattctggacat
ctggcaatgcagcatccagctgcagttccaaacatgcctcatttaaatatcagtaatcaa
agaatgccaggattgcctcttatagatatccgtccaggcctaatgccccattcacctgga
ccgaggtttccattaatgcagccaggaatgccaccacagcgtagtattcctcctcctgca
atccttgatccatctcttcacccaccaccacctcgaggtccttttcctccaggagatatt
tttaatcaaacggaaagaccttttggaacaccaggaagacaaaacatcgataacatttct
aatccagagaaaaggctaccacttggaggtgataacattcaacaggagggagacagagat
tatcgctttcctccggtggaaaaccgagataaccttaacagaccatctccagtggatgtc
agagattctgttggacgaccaccagttgatccaagagagggtttaggaaggcctccagta
gatggaagagagcacttcccaagaccacatatagacatgagagaaaattttggaagacca
ggtatagataaccttggccgaagagagcattttggtttcaattcagacaagcactgggga
cagagaggagattatgatgaaagagagcaccatgccttccctatttatggtggtcccaaa
ggcttccatgaagacagagagaggtttcggcatgtaaactataggtttgatagtagaagt
ggtcctggttggaatagaggatttgaacaagatgctcacagagattttgatgaccgcaga
agaccctgggaaagacagagggatagggatgacagagattttaatttctgcagagaaatt
aatggaaacaggtttggaagagacagaatgccaaacaactggatcccgcctccacatcca
cgagtttttgaatattttgatggggccacttctcaacgcaaagctgataatatgccccag
gtaaatggtgaaaatacagagacagaaagtcagccaccaactgcacaggtgcaggatgat
ccagaactttatgaaaaactgacatcttccgtcgagataaacaaagagaagagtgacaca
gaagctgatatagagaatgaaccagtggtagaaagcacagaaactgaggggacataa
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