Oenanthe melanoleuca (Eastern black-eared wheatear): 130251107
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Entry
130251107 CDS
T09236
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130251107 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oma03041
]
130251107 (CDC40)
Spliceosome [BR:
oma03041
]
Complex C
Other components
Step II factors
130251107 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_RFWD3
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
130251107
NCBI-ProteinID:
XP_056343461
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Position
3:43402961..43440652
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AA seq
581 aa
AA seq
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MSAAIAALASYGGSDSEPDSEPETEGGSQRSAAVLASRDAVLHLRAPPAAPPALPVDAAP
EVAVKEDVETGVHLDPAIKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPA
HINDFMFEQQRRTFATYGYALDPSVDNPEAATKYIGSVEEAEKNQGLTVFETGQRKIEKR
KKFKENDASNIDGFLGPWAKYVDEKEVAKPSEEEQKELDEITAKRQKRGKLEDDKPGEEK
TILHVKEMYDYQGRSYLHVPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKGVSAVRLFP
LSGHILLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNNAGTQFLSAAYDRYLKL
WDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHL
GAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDADGKLNIWDWK
TTKLYSRLKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggccatcgccgcgctcgcctcctacggcggctccgactcggagcccgactcg
gagccagagactgagggcggctcacagcgctccgccgccgtgctcgccagccgcgatgcc
gtgctgcacctccgggcgcctcccgccgcgcccccggccctgcccgtcgatgcggccccg
gaagtagccgtgaaggaagatgtggaaacaggggtccaccttgatcctgctatcaaggaa
gttcaatacaatcccacttatgaaactatgtttgcacctgagtttggaccagaaaaccca
tttaggactcagcaaatggctgcacctagaaacatgctttctggatatgcagaaccagct
cacatcaatgatttcatgtttgaacaacaaagaagaacatttgcaacctatggttatgca
ttagatccctctgtagataaccctgaagctgctaccaaatatattggttctgtagaagaa
gctgaaaaaaatcaaggtttaacagtgtttgaaacaggacaaaggaaaattgaaaaaagg
aagaaattcaaggagaatgatgcatctaatattgatggttttctgggaccatgggcaaag
tatgttgatgaaaaagaagtagccaaaccatcagaagaagagcagaaggagttggatgaa
ataacagctaagaggcagaagagaggaaaactggaagatgataaacctggagaggagaag
actatattacatgttaaagaaatgtatgactaccaggggagatcttatcttcatgtccct
caagatgttggagttaatctgcgttctacagtaccacctgagaagtgctatcttccaaag
aaacaaatccatgtgtggtctgggcatacaaagggtgtcagtgcagtcagattgtttcct
ctgtctgggcatatactgttgtcttgctctatggattgcaaaattaagctatgggaggta
tatggtgatcgaagatgtctacgaacatttattggacacagtaaagctgttcgagacatc
tgttttaacaatgcaggcactcagttccttagtgctgcatatgaccgctatctaaaactc
tgggacactgaaacagggcaatgtatttcaagattcaccaacaggaaggttccttattgt
gtcaaattcaaccctgatgaagataaacaaaatctctttgttgcagggatgtcagataag
aaaattgtgcagtgggatattcgaagtggtgagattgtgcaggaatatgataggcatttg
ggagctgtcaacaccattgtgtttgtggatgaaaatagaaggtttgtgagtacatctgat
gacaagagtttaagagtctgggaatgggacattcctgtagacttcaagtacatagctgag
ccaagtatgcattccatgccagccgtgactttgtctccaaatgggaaatggttggcttgc
cagtcaatggataaccaaatcttgatttttggagctcagaacagattcagattaaacaaa
aagaaaattttcaaaggtcacatggtagctggctacgcttgtcaagtggatttttcacct
gatatgagctatgtgatatctggagatgcagatgggaaactaaacatctgggactggaag
acaacaaaactctacagcaggttaaaagcacatgacaaagtctgtattggtgcagtgtgg
catccacacgaaacatccaaagtcatcacgtgtggttgggatggtctgattaaactgtgg
gactaa
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