Oenanthe melanoleuca (Eastern black-eared wheatear): 130251329
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Entry
130251329 CDS
T09236
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130251329 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oma03400
]
130251329 (MSH2)
DNA repair and recombination proteins [BR:
oma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130251329 (MSH2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF6437
Motif
Other DBs
NCBI-GeneID:
130251329
NCBI-ProteinID:
XP_056343852
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All DBs
Position
3:94711003..94755309
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AA seq
936 aa
AA seq
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MAVEPPREAVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTAHGADARLAARELF
RTRAVIRQLAGAPGTPKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSAADGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQLNSAALPEMEKQVAVSSLSAVIKFLELLSDESNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKSRIE
ERLNLVEAFVTDPELRQRLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNV
VQALEKHEGAHQMLLLAVFITPLTDICSDFSKFLEMIETTLDMEKVENHEFLVKASFDPN
LTELREKMNELEEKMQSLLKTAAKELGLEAGKSIKLETNSQFGHHFRVTCKEEKALRNNS
KYGIIDTQKNGVKFTNSKLSTINDEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMND
VVAQLDAIVSFAHVSNGAPVPYVRPVVLEKGQGRIVLRGARHPCIEVQDEVAFIPNDVTF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICGF
AMFATHFHELTALAEQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGKSKESEGEPPAKKLYREREEGEKIIQDFLCQVKALPLAD
MSEEDIKVKLKQLRNDVLAKNNSFVNEIISRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggaggccgtgtggcccgagggcgcgggggccgaggcgggc
ttcgtgcgcgccgtgctctcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggcgcacggcgcggacgcgcggctggccgcccgcgagctcttc
cgcacccgcgccgtcatccggcagctggcgggggcgcccggaactccaaagcttgagagt
gtcgtgcttagcaaaatgaactttgaatcttttgtgagggacctgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagcaaatctgtcaaagaaaatgattgg
tatttggcttacaagggttctccaggaaatcttgcccagtttgaggaagttctctttgcc
aacaatgatatgtccacagccattggggttgtgggggttaagctgtctgctgctgatgga
cagagagtagtaggagtgggctatgtcgacactacactgagaaaattgagtgtttgtgag
ttcccagataatgatcagttctcaaatcttgaagctctactggttcaactgggcccgaag
gagtgtgtgctgccaggaggagagactgcaggagagatgggaaaactgagacaagtcatt
cagagaggaggaatcctgattacagacaggaagaaggcagatttcacaacaaaagatatt
gttcaggatctcaatcgcttgttgaaatcaaaaaaagaagagcagctgaatagtgcagca
ctgccagagatggaaaagcaggttgctgtttcgtctttgtcagccgttatcaagtttttg
gagctgctgtcagatgagtctaattttggacaatttgaactgactacttttgatcttagt
caatatatggttctagacaatgcagctgttcaagctctcaacctttttcagagttctgtg
gaaaatgcaaatactgcacagtctctagctggtttactgaataaatgcagaacccctcaa
ggacaaagactagttaatcagtggatcaaacaaccacttatggacaagtccagaattgag
gaaaggttgaacttggttgaagcttttgtgacggatccagagctgcgccagcgcctccaa
gaagatctgttacgtcgctttccagacctcaaccggctggcaaagaaatttcagagacaa
gcagcaaacttacaagactgttaccgaatgtaccaggctatcaatcaactgcctaatgtt
gtacaagcactagaaaaacatgaaggagctcaccagatgttgttgttggctgtatttata
acacctcttactgatatctgctctgacttctcaaagtttttggagatgatagaaacaaca
ttggacatggaaaaggtggagaatcatgaatttcttgtcaaggcttcttttgatcctaat
ttaacagaattaagagagaagatgaacgaactggaagaaaaaatgcagtccttactaaag
actgcagccaaagaactaggtctggaagctggcaaaagtatcaaactggagacaaattca
cagtttggacatcactttagggtaacttgtaaagaggaaaaagctctccgtaacaattca
aaatatggaatcattgatacacagaagaatggtgtgaaatttactaacagcaaactgagc
accatcaatgatgaatatataaagaacagggaagagtatgaagaggctcaggatgcaatt
gttaaggaaatcattaacattgcttcaggttatgcagagcccatccagaccatgaatgac
gtggtggctcagctggatgccattgtcagctttgcccacgtgtcaaacggagcgccggtg
ccttacgtgcggcctgtcgttctggagaagggacaaggcaggattgtcctgagaggtgcc
aggcatccctgcatcgaggtgcaggatgaggtggccttcatccccaatgatgttacattt
gagaagggcaagcagatgttccacattattactggccctaacatggggggaaagtcaaca
tacatccgacagacaggagtgattgttctgatggcccaaattgggtgttttgtgccgtgt
gagtctgcagaaataaccattgtggattgcatcctggctcgggtgggagcaggagacagc
cagctgaaaggagtgtctactttcatggctgaaatgctggaaactgcttcaatccttagg
acagcaactgaaaactccctgataatcattgatgagctgggaagaggaacttctacttat
gatggctttggcttagcttgggctatctcagaatacattgccagcaaaatctgtggcttt
gccatgtttgctacacacttccatgaactcacagctcttgctgagcaagtgccaacagta
aataacctccatgtcactgctctgaccagcgatgacacgctgacgatgctttatcgtgtc
aaggaaggtgtttgtgaccagagttttggaatacacgtagcagagttggcagctttccca
aaacatgtgatagaaagtgcaagagagaaagctttggagctggaagagtttcaaaacatt
ggcaagtccaaggaatctgaaggagaaccaccagccaagaaattatacagagaaagagag
gaaggtgaaaagataattcaggattttctttgtcaagtgaaagcattgcccctggcagat
atgtcagaagaagacatcaaagtcaagttgaagcagttgagaaatgatgttctggcaaaa
aacaacagttttgtgaatgaaataatttctcgaacgaaagttacatcatga
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