Oenanthe melanoleuca (Eastern black-eared wheatear): 130251692
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Entry
130251692 CDS
T09236
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130251692 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oma04121
]
130251692 (TRIM54)
Ubiquitin system [BR:
oma04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
130251692 (TRIM54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-RING_5
zf-B_box
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
RHH_9
CYP38_PsbQ-like
Sina_RING
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
130251692
NCBI-ProteinID:
XP_056344509
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Position
3:279754..283620
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AA seq
380 aa
AA seq
DB search
MNFAVGLKPLLAEARSMESLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSSAVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQHLMCEEHEDERINIYCLRCEAPTCSLCKVFGAHKDCEVAPLPAVYQRQKSELSDGIAM
LVAGNDRIQAIITQMEEICHTIEENGRRQKQHVGLRFDALYAILEERKKELLQSIAAEQE
AKLQRVRGLIRQYGDHLEASSKLVESAIQAMEEPQMALYLQHSKELLKKITDMSKASMSS
RPEPGYESMDHFSINVDYVAEMLRTIEFQTEPLGEDEGDGPGDGSEAAAEEDRLDSLEVP
EAAEDVGPRQKPASSPHGQH
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtagggctgaagccgcttctggcggaggcgcggagcatggagagcctg
gagaagcagctcatctgccccatctgcctggagatgttctccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgtgttccaggcctccaacccg
ctgtggcagtcgcggggctccagcgcggtgccgtcgggcgggcggttccggtgcccgtcg
tgccggcacgaggtggtgctggaccggcacggggtgtacggattgcagcggaacctgctc
gtggagaacatcatcgacatctacaagcaggagtcggcccgaccccttcatgccaaggct
gagcagcacctcatgtgcgaggagcacgaggacgagcggatcaacatctactgcctgcgc
tgcgaggcgcccacctgctccctgtgcaaggtgttcggggcgcacaaggactgcgaggtg
gccccgctgccggccgtctaccagcgccagaagagcgagctcagcgacggcatcgccatg
ctggtggcggggaacgaccggatccaggccatcatcacgcagatggaggagatctgccac
accatcgaggagaacgggcggcggcagaagcagcacgtggggctgcgcttcgacgcgctc
tacgccatcctggaggagcgcaagaaggagctgctgcagagcatcgcggccgagcaggag
gccaagctgcagcgagtgcgcggcctcatccgccagtacggagaccacctggaggcctcc
tccaagctggtggagtcggccatccaggccatggaggagccccagatggccctgtacctg
cagcactccaaggaactcctgaaaaagatcactgacatgtccaaggcatcgatgagcagc
cgccctgagcccggctatgagagtatggaccacttctccatcaatgtggactatgtggct
gagatgctgaggaccatcgagttccagacagagcccctgggcgaggatgagggcgatggg
cctggggacggcagcgaggcagcggcggaggaggacaggctggacagcctggaggtgccc
gaggctgctgaagatgtggggccgaggcagaagccagcgagttctccccatggtcagcac
tga
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