Oenanthe melanoleuca (Eastern black-eared wheatear): 130251987
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Entry
130251987 CDS
T09236
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03020
RNA polymerase
oma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130251987 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
130251987 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oma03021
]
130251987 (POLR2B)
03400 DNA repair and recombination proteins [BR:
oma03400
]
130251987 (POLR2B)
Enzymes [BR:
oma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
130251987 (POLR2B)
Transcription machinery [BR:
oma03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
130251987 (POLR2B)
DNA repair and recombination proteins [BR:
oma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
130251987 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
130251987
NCBI-ProteinID:
XP_056345038
LinkDB
All DBs
Position
4:16867832..16884349
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacgcggacgaagatatgcaatatgatgaagacgatgatgaaatcacccccgac
ctgtggcaggaggcctgctggattgttattagctcctattttgatgaaaagggtttagtc
aggcaacagctggattcctttgacgagtttattcagatgtctgtgcagagaattgttgaa
gatgctccaccaattgatttacaagctgaagcccagcatgcctcaggagaagtggaagag
ccaccccggtatctgttgaagtttgaacagatctatctctccaaacctacacattgggaa
agagatggagcaccatcacctatgatgccaaatgaagccagactgagaaaccttacgtat
tctgcccccttgtatgtggatataactaaaacagttattaaggaaggggaggaccaattg
cagacccaacatcagaaaacctttataggaaaaattcctatcatgttgcgttccacgtac
tgtttgctgaatggcttaactgaccgtgatctttgtgagctgaatgagtgcccacttgat
cctggtggttacttcatcattaatggatcagaaaaggttctgattgctcaggagaaaatg
gctacaaacacagtgtatgtgtttgcaaagaaagattcaaaatatgcctacacaggagag
tgtagatcttgtctggaaaattcctctcgaccaacaagtactatatgggtcagcatgctg
gccagaggtggacagggtgccaagaagagtgccattggtcagcgcattgtagcaactctg
ccatatatcaaacaagaggtccccatcatcattgtcttccgtgcactcggctttgtgtcc
gacagggacattctagagcacatcatttatgattttgaagacccagaaatgatggaaatg
gtcaaaccttctctggatgaagcatttgtcattcaggagcaaaatgttgccctaaacttc
attggctcaagaggtgccaagccaggtgtcaccaaagaaaagagaatcaagtatgccaaa
gaagtcttgcagaaagaaatgctcccacatgttggtgtcagtgacttctgtgaaaccaaa
aaggcctattttctagggtatatggttcatagactgttgctggcagcactgggaagaaga
gagctggatgacagagatcattatggcaacaaaagactggatcttgctgggccactcttg
gctttcctgttcagaggaatgttcaagaatttgctgaaggaagtgagaatctatgcacag
aagttcattgacagagggaaagatttcaacttggagttggcaattaaaacaagaattatt
tcagacggtttgaaatactcattggcaactggaaactggggtgaccagaagaaagctcat
caggccagagcaggagtatctcaggtgttgaaccgcctgactttcgcatccacactttcc
cacctgagacgcctgaattccccgattgggagagatggaaaactggccaagccccggcag
ctgcacaacaccctgtggggaatggtttgccctgctgagacccctgagggtcatgcagta
ggacttgtgaagaacttagccctgatggcttacatttctgtggggtctcagccatcccca
attctggaattcttggaagagtggagtatggaaaacttagaagaaatatctccagcagca
atagctgatgctaccaagatatttgttaatggctgctgggtaggaatacacaaagatcca
gagcagctgatgaataccctaaggaagcttcgtcgtcagatggacatcattgtgtcagag
gtgtcaatgattagagatattcgtgagcgagaaatccgcatctacactgatgcaggcaga
atttgtcggccccttttaattgtggagaaacagaagttgctgctgaagaaaaggcacatt
gaccaactgaaggaacgagagtataacaattacagctggcaggatctcgtggccagtggt
gtagtagagtacattgacaccctggaagaagagactgtgatgctggcaatgactccagat
gacttgcaagagaaaggtgtggcatattgttcaacatacacacactgtgagattcaccca
tccatgatcctgggagtgtgtgcatctattatccctttccctgatcacaaccagtctccc
aggaacacataccagtctgctatgggtaaacaggctatgggagtctacatcaccaacttc
catgtccgtatggatacgctggcacatgtgttgtattatccccagaagcccctggtaaca
acacgttccatggagtacttgaggttcagagagttaccagcaggtatcaactcgattgta
gcaattgcatcatacacaggctataaccaggaagactctgtcattatgaaccgttctgct
gttgacagaggctttttcaggtctgtgttctatcgctcatacaaagagcaggagtctaag
aaagggtatgaccaagaggaagtttttgaaaagcccacacgtgaaacttgccaaggtatg
agacacgcaatctatgacaaacttgatgatgatggtttgatagcccccggggtacgtgtg
tctggggatgatgtcatcattggcaaaacagtcacactgccagaaaatgaagatgagctg
gaaagcaccaacagacgcttcaccaagagagactgcagcaccttcctgcggaccagcgag
actgggattgtagatcaggtcatggtaaccctgaaccaggagggatacaaattctgcaag
attagggtacgttctgtaagaattccacaaattggagataaattcgctagcagacatggt
cagaaaggaacctgtggtatccagtacaggcaagaggatatgcccttcacgtgtgaaggc
atcacacctgatatcattatcaaccctcatgccatcccttcccgtatgaccattggtcac
ttgattgagtgtcttcagggcaaggtgtctgcaaacaagggagaaattggtgatgctaca
ccttttaacgatgctgtcaacgtgcaaaagatttccaaccttttatcagattatggctat
catctaagaggaaatgaggtcctctacaatggcttcactggtcgaaaaatcacatcccag
atcttcattggtcctacctattaccagcgcttgaagcacatggtggatgacaaaatccat
tctcgtgcacgagggccaatccagatccttaacagacagcccatggaaggcagatctcgc
gatggtggccttcgctttggagaaatggaacgagattgccagattgctcatggagcagcc
cagttcttgagagaaagactgtttgaagcttcagacccataccaggtccatgtgtgtaac
ctctgtggaatcatggcaattgcaaacacgaggactcacacctacgaatgccgcgggtgc
cgcaataaaactcagatatctttggttcgaatgccctacgcctgcaaactcctcttccaa
gaactgatgtctatgagtattgcacctcgtatgatgagtgtttag
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