Oenanthe melanoleuca (Eastern black-eared wheatear): 130252038
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Entry
130252038 CDS
T09236
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03030
DNA replication
oma03410
Base excision repair
oma03420
Nucleotide excision repair
oma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130252038 (RFC1)
03410 Base excision repair
130252038 (RFC1)
03420 Nucleotide excision repair
130252038 (RFC1)
03430 Mismatch repair
130252038 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oma03032
]
130252038 (RFC1)
03400 DNA repair and recombination proteins [BR:
oma03400
]
130252038 (RFC1)
DNA replication proteins [BR:
oma03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130252038 (RFC1)
DNA repair and recombination proteins [BR:
oma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130252038 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_14
Rad17
AAA_30
RNA_helicase
BRCT_2
AAA_5
RuvB_N
AAA_17
AAA_33
AAA_16
nSTAND3
AAA_7
AAA_18
TIP49
AAA_19
NTPase_1
Motif
Other DBs
NCBI-GeneID:
130252038
NCBI-ProteinID:
XP_056345157
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All DBs
Position
4:47938365..47972133
Genome browser
AA seq
1189 aa
AA seq
DB search
MAPAPVRGTPRPPHSPARRGRDGSSARRAAGVGAKAGAWSRERPARHRDRAAAAAAAAMD
IRKFFGVVPPGKRQGCETVKKSEKIKNGEGPSSGKKREKETKVNNSPSEDDSKQKRTKKK
RRIIYDSDSEEELQSVKKSKKSPEKKAATSKLGKVLKQDPVVYISETDEDDDFASERISL
KPKENGTSAVGCPGANTVTKEAVKPQAKIKPLSPVKQTPTSALDFFGTRSVQRSEKKLVA
SKRKEPSQSRDNTIDDEAIARQLQLEEDSELERQLHEDEEFARTLAMLDETPQKKKARKY
TEEQTALSLNSSPNTTAGYKHSERVKAADSTGAAKNYSAKPQEKCEQLKDSRVSPQSSDG
KKEEIAEKERGAHNSLSRGKAASGKEEKTTPKKEKVSPKKTESISPEDSEKKRNNYQAYR
SFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSR
KTNYLVMGRDCGQSKCEKASTLGTKVIDEDGLFDLIRTMPGKKSKYELAAETEAKKAESN
PKRTPQKAEAGKRNFSPYKREANNKKYKSTPEKGDTIRSVKKETTAVRKLTDFKRQTAEE
REAPKPKGSSVSEVDEDGTEKLLWVDKYKPVSLKAIIGQQGEQSCANKLLRWLRNWHKNT
LEDGQAKPSKTGSKDDGTGFKAALLSGPPGVGKTTTAALVCKELGYSYVELNASDTRSKN
SLKEVVAESLNNTSIKDFYSGASSSVSGKHVLIMDEVDGMAGNEDRGGIQELIGLIRHTK
IPIICMCNDRNHPKMRSLVHYCLDLRFQKPRLEQIKGAMMSIAFKEGLKIPPPAMQEIIL
AANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDVVRKVFATGEEAARM
SLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNLKKHLVLLSRAADSICDGDIVDRQI
RSKQNWNLLPTQAIYASVLPGELMRGYMSQFPVFPSWLGKFSSTGKHDRVIQELAMHMSL
RTQTCKRTVNLDYLSYLRDALVQPLKDFGADGVQQAVTFMDSYCLMKEDVENIMEISTWG
GKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLSSVKASKRQSGSATTLDLSEDLIVEEIQ
SDEDEQDTLDSDAMIKQKKVKSSKLPKREKKEETTKKEGKRKEKTRHLE
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggccccggccccggtgcggggcacgccccggccgccccacagccccgcccgtcgcggc
cgtgacggcagctcggcgcgccgggccgcgggagttggcgcgaaggcgggagcatggagc
cgggagcgtcccgctaggcacagggaccgcgccgccgccgccgccgccgccgccatggat
atccggaaattctttggtgttgtacctcctggaaagcgacaaggatgtgagactgtgaaa
aagagtgaaaaaattaaaaatggcgaaggaccttcaagtgggaagaaaagagagaaggag
actaaggtgaataattcacccagtgaagatgattccaaacaaaagcggacaaaaaagaag
agaagaataatctatgattcagattcagaagaggagttgcagtcagtgaaaaaatctaag
aagtcacctgagaaaaaagcagctacttcaaaacttggcaaagttctaaagcaggatcct
gttgtttatatttcagagacagatgaagatgatgattttgccagtgaaagaatttccctg
aaaccgaaggagaatgggacatcagcggttggttgtccaggagcaaatactgttacaaaa
gaagcagtaaagccacaagctaaaatcaaacccctctctccagtgaaacagactcccacc
tctgcacttgatttttttgggacaaggagtgtccaacgctcagaaaagaaactggtggca
agtaaaaggaaagagccttcacagagcagagacaacacgatagatgatgaggccattgct
aggcaactgcagcttgaagaagattcagagctggagagacagctgcatgaagatgaagaa
tttgctagaactctggccatgttggatgaaacaccacagaagaaaaaggctcggaaatat
acagaagagcaaacagcactgagcctcaacagcagccctaacacaacagcaggatataag
cactcagaaagagtgaaagcagcagactcaactggtgcagccaagaattactctgcaaag
ccacaagaaaaatgtgagcagttgaaagattctcgtgtatccccacaatcatctgatggt
aaaaaagaagagattgctgaaaaggaaagaggtgctcacaattcactatcaagaggaaaa
gcagcttcagggaaagaggagaagacaacaccaaagaaggagaaagtttctcccaagaag
actgagtcaataagtcctgaggactctgaaaagaagcgaaacaattaccaagcttaccga
agcttccttaatcgtgagggtccaaaagcactgggttccaaagagatacctcagggagct
gaaaattgcttggaaggcctgacatttgtgattactggtgttctggagtgtattgagaga
gatgaggccaagtctctgattgaacgttatggaggaaaagtaactggcaatgttagcagg
aagacaaattacctggtgatggggcgggactgcggccagtccaaatgtgagaaggcatca
actttaggtacaaaagttattgatgaggatggtctgtttgatcttattcgaactatgcca
ggcaaaaagtccaaatatgagctggcagctgaaacagaggcaaagaaagcagagtcaaac
cccaaaaggacaccacagaaagctgaagctggaaaaaggaattttagcccctacaaaagg
gaagctaataataaaaaatacaaatctactcctgaaaagggagataccatcagatctgtc
aagaaagaaaccacggctgttcgaaaacttacggactttaaacgtcagactgcagaggag
agagaagccccaaaacctaaggggagctcagtttctgaggttgatgaagatggcacagag
aaattgctatgggtagataaatacaagcctgtgtctcttaaggcaattattggacagcag
ggtgagcaaagctgtgccaacaaactgctccgatggctcaggaattggcacaagaacacc
ttggaagatggacaagcaaaacccagtaaaactggaagcaaagatgatgggacagggttt
aaagcagcattgctttctggtccacctggagttggtaaaactacaacagctgctttggtt
tgtaaggaactggggtacagctatgtggagctgaatgccagtgacacacgcagcaagaac
agcctaaaggaagtagttgctgaatcactgaacaacaccagcatcaaggacttctattct
ggtgcatcttcatcagttagcgggaaacatgtattgatcatggatgaagtggatggtatg
gcaggcaatgaagacagaggagggattcaggagttgattggcttgatccgacacacgaag
atacccatcatttgtatgtgcaatgatcgcaaccaccccaaaatgcgctccttggtccac
tactgcttggatcttcgttttcagaaacctcgtctggagcagatcaaaggtgccatgatg
tctattgcatttaaagaaggtttaaaaattccccctcctgctatgcaagaaataatcctg
gcagcaaatcaggacatcagacaggttttacataatcttaatatgtggtgtgcaaaagac
aaatcactgacttatgatgaagctaaaacagatgccagcagagccaaaaaggacatcaaa
ctgggccctttcgacgttgtccggaaggttttcgctactggagaggaggctgctcgtatg
tctcttatagacaaatcagatcttttcttccatgattattcactagcacctctctttgtc
caagagaactatgtgcatgtgaaaccagctgctgctggaggtaatttaaaaaagcacttg
gtgctcttgagtagagcagctgatagtatatgtgatggtgatatagtggacaggcagatt
cgtagcaagcagaactggaatcttcttccaacacaggctatttatgcaagtgttctccca
ggggagctgatgaggggttacatgtcccagtttcctgtctttcccagctggctggggaaa
ttttcatccacaggcaaacatgatcgtgtcattcaagaactggcaatgcacatgagtctc
agaactcagacatgcaagaggacagtaaatttggattatttgtcatatttgcgggatgca
cttgtccagcccttgaaagactttggagcagatggtgtgcaacaagctgtaacatttatg
gactcttactgcttgatgaaagaagatgttgaaaatatcatggaaataagcacgtgggga
ggcaaacccagtcctttttcaaagctggatcccaaggtcaaagcagctttcacacgtgcc
tacaacaaggaggcacatctgactccatattcacttagttctgtcaaggcatctaaaagg
cagtcaggatctgcaacgaccttagatctgagtgaagacctgattgtggaagagatccaa
tctgatgaggatgagcaggatactcttgacagtgatgcaatgattaagcaaaaaaaggtg
aagtcttctaagctgccaaaaagagagaaaaaagaagaaaccacgaaaaaagaaggaaaa
agaaaagagaaaacaagacatttagagtaa
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