Oenanthe melanoleuca (Eastern black-eared wheatear): 130252151
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Entry
130252151 CDS
T09236
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oma00536
]
130252151 (COL25A1)
Glycosaminoglycan binding proteins [BR:
oma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130252151 (COL25A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130252151
NCBI-ProteinID:
XP_056345386
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Position
4:complement(23977319..24272842)
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AA seq
772 aa
AA seq
DB search
MGGGGKEIRAAAAEGCASTLGKSRGAAGRDGSGQPGLGKPGCGGERCPRRAGPLGSALAA
LLSALAAASCVYLGLRTSDLQARVAAIEGARGSLAAAAPLPPLPGFSLEQLNAMMQEKVE
RLLAQKSYEHFAKMRVAREAAPECNCPPGPPGKRGKRGRRGETGPPGLPGRNGYPGPIGM
DGKLGQPGPQGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGP
PGPPGPPGPRGPPGDTGKDGPRGMPGLTGEPGKPGEQGLTGPQGPPGQKGSVGVPGVPGR
DGQVGEPGLPGVAGEKGEAGLKGDPGERGEKGDAGENGLKGDTGEKGDPGSSAAGIKGEP
GESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGDRGEAGPVGKGERG
EPGIPGPKGKTGEPGSRGPKGSKGDTGERGDTGSAGPRGPPGQKGDQGATEIIDYNGNIH
EALQRIATLTVTGPPGPPGPQGLQGSKGEPGSPGAPGVDGEQGPKGSKGDTGDPGMPGEK
GGIGLPGLPGANGMKGEKGDVGLPGAQGPSMVGPPGPPGPHGPPGPMGPHGLPGPKGASG
LDGKPGARGIDGPVGPHGPAGPKGERGEKGTAGDPGPRGPYGLPGKDGEPGLDGFPGPRG
EKGDVGEKGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQKVGWAELF
LFRSSMSLAHRNACHTEQCQDTLQSLLSSNAGPDLSMTVVHGICCNLCRIVH
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggggggcggaggaaaggaaatcagagctgccgcagccgaagggtgtgcgagcacgctg
gggaagagccgaggagccgcaggacgggatggcagcgggcagcccgggctcgggaagccg
ggctgcggcggggagcgctgcccgcggcgggccggcccgctgggctccgcgctggccgcg
ctgctctcggcgctggccgcggcctcctgcgtctacctggggctgcggaccagcgacctc
caggccagggtcgcggccatcgaaggcgcccgagggagcttggccgccgccgcgccgctc
ccgccgctgcccggcttttccctggagcagctgaacgcgatgatgcaggagaaagtggag
cgacttctcgcccagaaatcctacgagcacttcgcaaaaatgcgagtagcgagagaagcg
gctccagagtgcaactgcccaccaggtcctccagggaaaagaggtaagcggggaagaaga
ggagagaccggacctcctggtctaccagggagaaatggctatccgggtccgattggtatg
gatggaaagctgggtcagcctggtcctcaaggccctcctggtccaaaaggcgagaaggga
gatcaaggtgatcagggccctcggatggtgtttcctaaaatcaatcatgggtttctctct
gctgatcagcagctcattaaacgccgcctcattaagggggaccaaggacaagctggaccc
cctggacctccagggccacctggacccagaggtcccccaggagacactggcaaagatggt
cctcgtgggatgcctggcttaacgggtgagccaggaaaaccaggagaacaaggattgaca
ggacctcaggggcctccaggacaaaagggttctgttggagttcctggtgttccagggagg
gatggacaagtgggtgaacctggtttgcctggtgtagcaggagaaaagggagaagcaggg
ctcaagggtgaccctggagaaagaggagaaaagggggatgctggtgagaatggactgaag
ggtgacacaggagaaaagggtgaccctggctcttctgctgctggaattaagggtgaacct
ggagaatctggacggcctggacaaaagggtgaaccaggccttcctgggcttcctggactt
cctggaataaagggtgaaccagggttcattggtccacaaggagaacctgggttgccaggg
cttccaggaacaaagggtgacagaggagaggcaggccctgttgggaagggtgagcgaggg
gaacctggaatccctggaccaaaggggaaaacaggtgaacctggatctagaggccccaaa
gggtcaaagggggatacaggtgagagaggtgacacagggtctgcaggtccacggggacca
cctggacagaagggtgatcaaggtgcaacagagataattgattataatggcaatatccat
gaagctctgcagaggattgccaccctgactgtcacgggaccaccaggaccaccaggaccc
caagggcttcaagggtcaaagggtgaaccaggatccccaggagccccaggagttgatgga
gagcagggtcctaagggctcaaaaggagacacaggtgatcctggaatgcctggagaaaaa
gggggaattggactgcctggcctaccaggagccaatggcatgaaaggtgaaaaaggagat
gttggcttgcctggtgcccaaggtccttcaatggtaggaccacctggaccacctgggcca
catggccctccaggccctatgggacctcatggactgcctggcccaaagggagcatctggc
ttagacggaaagccaggagcccggggtatagatggcccagttggtccccatggccctgca
ggtcccaaaggagagagaggtgagaagggaactgcaggtgaccctggacccagaggacca
tatggcttgcctggcaaagacggcgagcctggccttgatggtttccctggtcctcgagga
gaaaagggtgatgtaggagaaaagggagaaaagggggaaaagggaaagaaaggcaaaaaa
gggcctaaaggggagaaaggagaacagggtgctcctggattagatgcaccttgcccattg
ggtcctgatggattaccaatgcctggctgttggcaaaaggtaggatgggcagagcttttt
cttttcaggagcagtatgtctttagcacacagaaatgcctgtcacactgaacagtgccaa
gatactcttcaaagcctcctatccagcaatgcaggaccagacctctccatgacagtagtt
catgggatatgttgtaatttatgtagaatagttcactga
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