Oenanthe melanoleuca (Eastern black-eared wheatear): 130253228
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Entry
130253228 CDS
T09236
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma04382
Cornified envelope formation
oma04510
Focal adhesion
oma04512
ECM-receptor interaction
oma04518
Integrin signaling
oma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130253228 (COL4A6)
04518 Integrin signaling
130253228 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130253228 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130253228 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
130253228 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oma04147
]
130253228 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
oma00536
]
130253228 (COL4A6)
Exosome [BR:
oma04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
130253228 (COL4A6)
Glycosaminoglycan binding proteins [BR:
oma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130253228 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
130253228
NCBI-ProteinID:
XP_056347607
LinkDB
All DBs
Position
4A:8352526..8473615
Genome browser
AA seq
1692 aa
AA seq
DB search
MGRTGVLVLLLLWLGAELASAGGKKSYSGPCGGRNCSAGCKCFPEKGARGRPGLIGLQGP
IGAPGFTGPEGLPGAKGERGAVGPPGPAGQKGDKGPMGVPGFQGISGIPGHPGQSGPRGL
PGLDGCNGTTGSHGISGPDGFPGLPGLPGHPGPKGLKGEPVFAQGSLKGMKGENGLPGLD
GVPGPKGFPGPIGPAGPIGLPGLQGPVGPPGPPGPKGNMGLGFQGEKGEKGDVGLPGPPG
PPPSTGILEFMGFPKGKQGEKGEPGPQGFPGDRGLPGIPGFGGVGEKGEKGVPGLPGGRG
LLGLDGSEGIPGKKGHPGVPGYPGLDGVEGMKGELGDIGPPGPPVIIDREGVVISGAPGD
PGNPGIPGPPGEEGIIGLPGLPGAPGFPGLERDGMGPGGSPGIPGVKGEAGEPGRPTIGI
PGPPGRAGLPGLPGAPGLPGSPRPSFSPVIILSGRTGAPGEPGQRGLPGALGPKGYKGEA
GDCACDGGVTRAGLKGISGPPGLSGSPGVPGAKGVCGDPGSVGAPGLRGRPASAGQQGLP
GLKGEKGDPSYATLKGARGDRGATAPRGPSGIPGTPGRDGLPGLPGPPGPPGDGGLGFPG
EKGLPGLPGSKGHRGETGSPGVGYPGPSGVRGPPGDTGMDGFPGQAGLPGPPGITLPCIV
PAAYGPPGTPGFPGLPGPKGSKGFSGIPGQPGLHGSKGQPGSPGIIGLLGEPGFPGPRGE
QGSQGLPGLDGTDGLPGKMGAPGLVGIKGALGDVFGAESGTLGEHGRPGLPGDKGLAGDT
GFPGPKGLDGRPGLLGVKGEQGHPGYSGVPGLRGSPGPGGPFGIKGKLGPLGSAGLAGAP
GPPGVKGVAGDVGPQGPAGMKGFPGLNGAPGSPGERGFLGPPGPFGQDGHPGFSGPKGEK
GSSGLLGFPGMPGLPGVPGVNGIKGTPGTAGGKGSPGVVGLQGQKGDRGDIGPPGLPVLW
TSEQALQIKGDKGDPGLAGLGGFPGPRGDKGIPGSRGQPGLPGPVGSPSKEKGLHGDSGF
PGPLGQPGLPGQKGAHGIMGFPGMPGERGSDGTTGTLGFPGPIGLPGPKGEQGESVGVPG
IAGPKGERGDPGFPGERGRDGLKGEPGYPGNTGVNGPKGSTGDLGQEGPAGIPGNAGLRG
APGPPGPPGQPGSVGFPGPHGTAGPKGFHGFPGLSGLNGLQGTKGSPGTPGLSEAGLKGP
AGLPGAKGEEGSPGLGRGAAGFPGPKGSSGDMGPPGPMGLPGLPGTPGVSLPSDIRGRPG
DAGIPGTDGSSGFPGPPGPRGPPGPASDQGDTGAPGFPGVLGLRGIKGDVGPTGPIGLPG
ASGFKGARGEPGLMGMPGKDGSPGDPGYAGLKGEMGHRGLPGRPGAPGITPQPEEVTAPA
GLPGLPGIDGVPGFDGDPGLHGPAGKPGPKGLPGRSGLKGRDGLPGTPGIAGDPGLSGAP
GPQGFEGVAGKPGSLGLPGMPGRSVGVGYTLVKHSQSDQIPPCPIGMNKLWDGYSLLYVE
GQEKSHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPVDSI
QIPQYISRCSVCEAPSQAVAVHSQDITIPQCPPGWRSLWIGYSFLMHTAAGAEGGGQSLV
SPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVEQEQQFVSAPLSETLKAGQLRT
RVSRCQVCMKNL
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcacgggggtgctggtgctgctgctcctctggctgggcgcggagctagcgagt
gcgggtggaaagaagtcctacagtgggccatgtgggggccgcaattgcagtgctggatgt
aaatgttttccagagaagggtgcacggggtagaccaggactgattgggcttcaaggacca
ataggagcacctggatttacgggcccagaaggtttgcctggagcaaaaggtgagagagga
gcagtgggccctcctggaccggctggacagaaaggtgacaagggtccaatgggagttcca
ggatttcagggcatcagtggcatcccaggtcaccctgggcagtctggacctagaggcctg
cctggcctagatggctgcaacggtaccactgggagtcatggcatttctggaccagatggg
tttcctggtctacctggactgcctggacatcctggcccaaaaggccttaaaggagaacct
gtttttgctcaaggcagtcttaaaggaatgaagggtgaaaatggtcttcctggattggat
ggagttcctggtccaaaaggttttccaggtccaataggtcctgcaggccctatagggtta
ccaggtttgcagggtccagtgggtccccctggaccaccaggtccaaaaggtaacatggga
ttaggctttcagggagagaaaggagaaaagggtgatgtagggctgcctgggcccccaggt
cccccaccatccactggaatactggaattcatgggatttccaaaggggaagcaaggagaa
aagggtgagccaggtcctcaaggattccctggagaccgaggattgcctggcatcccgggc
tttggaggtgttggagaaaaaggagaaaaaggtgtgcctggcttaccaggtggaaggggt
cttttgggactggatggatctgaaggaattccaggaaaaaagggccatccaggtgttcca
ggctatccaggactggatggagttgaaggcatgaagggtgaattaggtgacatcggtccc
ccaggtccacctgtcattattgacagggaaggtgtagtcatttcaggtgccccaggtgac
cctggaaacccgggaatacctggtcctccaggagaggaagggatcattggtttacccggc
cttccaggggctccagggtttccaggcctggagagagatggaatgggccctggagggtct
ccaggtattccaggagtcaagggtgaagcaggagaaccaggaagaccaacaattggaata
ccaggccctcctggcagagccggtttaccgggtctgccaggagcaccaggattgcctggt
tcaccacgcccttcattctccccagtgataatcctgagtggaaggactggggctccaggg
gagcctgggcaaagagggcttccaggagctttgggtccaaagggctacaaaggagaagca
ggtgattgtgcttgtgatggaggagttacaagagctggtctaaaaggcatctcaggtcca
ccagggctgtcaggaagccccggtgtgcctggtgccaagggtgtttgtggagacccaggc
tctgtgggagcaccaggactgcgaggccgtccggcttcagctggtcagcaaggacttcca
ggtcttaagggagaaaaaggggatccatcctatgcaacactcaaaggtgctcgtggggat
cgcggtgcgacagcacccagaggaccttcaggcatcccaggaactccaggcagggatgga
cttccaggcttgccaggcccaccaggccctccaggtgatggtggacttggtttcccaggt
gaaaaaggtttgccaggactacctggctccaagggccatcgtggagaaactggctctcct
ggtgttggatacccaggtcccagtggagttcgtggaccaccaggtgacactggaatggat
gggtttccaggacaagcaggtcttccaggccctccaggtatcacattgccctgcatagtt
cctgcagcatatgggcccccagggactcccggctttccaggactgccaggtcccaaaggc
agcaaaggcttttctggcattccaggccaacctggattacatgggtctaaaggacagcca
gggtctccaggaataataggcttgctaggggaacctggcttccctggacctcgaggagag
caaggctcacaaggacttccaggactggatggaacagatggtttgcctgggaaaatgggt
gctccaggcttagttggaataaaaggagctcttggagatgtatttggtgctgagagtgga
accctgggagagcatggccgacctggacttccaggtgataaagggcttgcaggtgatact
ggatttccaggaccaaaagggctggatggacgaccaggcctcctgggtgttaaaggtgaa
cagggtcatccaggatattcaggtgtccctggattgcggggatctcctggccctggaggt
ccttttggcattaagggaaaactgggacccttgggatcagctggccttgcaggagcacca
ggacctcctggagtcaaaggcgtggctggggatgtaggaccacaaggccctgctggtatg
aaaggcttcccaggtcttaatggtgctccaggatctcctggggaaagaggattcttaggg
ccacctgggccttttggtcaagatggacatccaggtttctctgggccaaaaggcgagaaa
gggtcttctggcctgcttggtttccctggcatgccaggactgcctggtgtccctggagtg
aatgggattaaaggaactcctggcacagctggaggaaaaggaagtccaggagttgtggga
cttcaaggtcaaaaaggtgacagaggtgatataggtccaccaggtcttcctgttctttgg
acttcagaacaggcactgcaaatcaaaggcgacaaaggagatcctggattagctggactc
ggagggttcccaggacctagaggtgataaaggaatcccaggaagccgtggccagcctggt
ctccctggtccagttgggtcaccaagcaaagagaaaggtctccatggtgactcaggcttc
cctggtccacttggacaacctggcctgccaggacagaagggtgcacatggtatcatggga
tttccaggaatgccaggagagaggggttcagatggcaccacaggaacacttggatttcca
ggacctattggtcttcctggtccaaagggtgaacagggagagtctgttggtgttcctggc
attgctggaccaaaaggagagagaggagaccccgggtttccaggagagagagggagagac
ggactcaagggtgagccaggctacccaggaaacactggggtgaatggacccaaaggcagc
acaggagatcttggccaagaaggaccagcaggaatccctggaaatgctgggctgagagga
gcccctggcccaccaggacccccaggccagccaggatctgttggattccctggacctcat
ggaacagcaggacctaaaggctttcatggatttccaggtttaagtggtctgaatggcttg
caaggcacaaaagggtctcctggaacaccaggtctgagtgaagctggactgaaaggacct
gcaggtctcccaggtgcgaagggtgaagaaggctctccaggcttgggaagaggagctgcg
ggattccctggaccaaaaggctcatcaggagacatgggtccccctggccctatgggactg
cctggcctgccaggaacacctggagtttctcttccatctgatatacgtgggagacctgga
gatgctggcattccaggcactgatgggagttcaggttttccaggtcctccaggaccacga
gggccccctggcccagcttctgaccaaggtgacacaggagctccaggtttccctggtgtt
cttggcttgcgaggcattaagggcgatgtgggacctactggtccaattggactccctgga
gcatctggattcaaaggtgcaagaggtgaacctggcctgatgggcatgccaggtaaagat
gggtctccgggggatcctggttatgctgggctgaaaggtgaaatgggccatcgaggtctt
cctggcagaccaggggctccaggaataaccccacagccagaagaagtgacagcccctgca
ggattacctggtctgccaggaattgatggtgttcctggctttgatggagatcctggatta
catggcccagctggaaaaccaggcccaaaaggtttgcctggaagatctggtttgaaagga
cgtgatggcttacctggaactcctggcatagctggggatccaggactttcaggtgcccca
ggaccacagggatttgaaggtgttgctgggaagccgggctcccttggtttgccgggaatg
cctggtcggagcgtgggcgttggatacactctggtgaagcacagtcagtcagatcagatc
cccccttgtcccataggaatgaataaactctgggacggctacagcttgttgtatgtggag
gggcaggagaagtcacacaaccaggatctcggttttgctggctcatgtttgcctcgcttc
agcaccatgccttttatttactgcaacatcaatgaagtgtgctactatgccagccgaaac
gacaagtcttactggctctccaccactgctcccatccccatgatgcctgtggatagcatc
cagatcccacagtacatcagccggtgctctgtgtgtgaagcaccttcccaggctgtggct
gtgcacagccaggacatcaccatcccacagtgtcccccgggctggcgcagcctctggata
ggatactccttccttatgcacactgcggcaggggcggaaggtggaggccagtcccttgtc
tcacctggttcctgcctggaggatttccgagctactccattcattgagtgcaacggtgct
cggggaacatgccattactttgccaacaagtacagcttctggctgactacggtggagcag
gagcagcagtttgtcagtgctcctctctcagagactctgaaagcggggcagcttcggact
cgtgtcagccgctgccaggtgtgcatgaagaacttgtag
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