KEGG   Oenanthe melanoleuca (Eastern black-eared wheatear): 130253742
Entry
130253742         CDS       T09236                                 
Symbol
DDB2
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
  KO
K10140  DNA damage-binding protein 2
Organism
oma  Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03420  Nucleotide excision repair
oma04115  p53 signaling pathway
oma04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:oma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    130253742 (DDB2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    130253742 (DDB2)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    130253742 (DDB2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:oma04121]
    130253742 (DDB2)
   03400 DNA repair and recombination proteins [BR:oma03400]
    130253742 (DDB2)
Ubiquitin system [BR:oma04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     130253742 (DDB2)
DNA repair and recombination proteins [BR:oma03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      130253742 (DDB2)
SSDB
Motif
Pfam: WD40_Prp19 WD40_CDC20-Fz WD40 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR19_1st EIF3I Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_Vps41 WD40_RFWD3 Beta-prop_NUP159_NUP214 PEP5_VPS11_N Frtz
Other DBs
NCBI-GeneID: 130253742
NCBI-ProteinID: XP_056348570
LinkDB
Position
5:complement(23260629..23274999)
AA seq 463 aa
MAPVNQPKDKKHERACQQWPEEAKSAGKRKRDYGERGNEKQEKKLFVRKTSKPSGKIGCS
GSGFVMRNKRVLPSQLERRCSIVHYVYQKMLGGSIQAQLRQRLELAFLHSLSSYCLFRRA
SPFDRRVTCLEWHPTHPSTLAVGSKGGDIILWDCEVLAKTCFIRGKGPGDSLGDIKFSPF
EAEKLYVASGDGTLSLQDLEGRAVQVISRALDCGHEHHNVCCWYCSVDVSASCRVVVTGD
NVGNVVLLSTSGEEIWKLKLHKKKVTHVEFNSRCEWMFATASVDQTVKIWDLRNIKNKTN
FLHLLPHEKPVNAAYFSPTHGAKLLSTDQHNEIRVYSSSDWTKPQHLIPHPHRQFQHLTP
IKATWHPRYDLIVVGRYPDPKFPGYTLNELRTVDVFDGNTGQMVCQLYDPNASGIISLNK
FNPMGDTLASGMGFNILIWNQEEMAAKKHERLLKAMTDTEMEP
NT seq 1392 nt   +upstreamnt  +downstreamnt
atggctccagtgaaccagccaaaggacaagaagcatgagagagcatgtcagcagtggcca
gaagaggcaaaatcagctgggaagaggaaacgggactatggagaaagagggaatgagaaa
caagaaaagaagttgtttgtgagaaaaacatctaaaccttcagggaaaattggttgcagt
ggaagtggatttgtgatgagaaacaagagagtccttccctctcagctggagcggcgatgc
agcattgttcattatgtctaccagaaaatgctgggaggctccattcaggcacagctcagg
cagagattggagctggcttttctgcattctctttcctcgtactgcctcttccgaagagca
agtccctttgacaggagagtgacatgtctggaatggcacccaacacaccccagtacgcta
gctgtcggttccaaaggtggagacatcatcctttgggactgtgaagtacttgctaaaacc
tgcttcataagggggaaagggccaggagattctctcggagacatcaagttcagtcctttt
gaggcagagaagctttatgtggcatcaggtgatggcaccctaagtctgcaggatcttgag
ggcagagcggtgcaggtgatctctcgtgccctggactgtggccatgagcatcataatgtt
tgttgctggtactgcagtgtggacgtttctgcaagctgccgtgtagtggtgacaggtgat
aatgtgggcaacgtggtcctgctcagcacttctggtgaagagatctggaagctgaaattg
cacaagaagaaagtgactcatgtagagtttaactcccgatgtgagtggatgtttgccaca
gcatccgtggatcagacagtcaaaatctgggacctcagaaacatcaaaaacaaaacaaac
tttcttcatctgcttccacatgagaaacctgtcaatgcagcttacttcagcccaacccat
ggtgccaagcttctgagcacagaccagcacaatgaaatcagggtttactcatcttcagac
tggaccaagccacagcatctgattccacatccacataggcagtttcagcacctcacacct
attaaggcaacgtggcatcctcgctatgacctcattgtcgtaggtcgctacccagacccc
aagttccctgggtacacgctgaatgagctgcgaactgtggatgtgttcgatggcaacaca
ggccagatggtttgtcagctctatgatccaaatgcttctggcatcatctcgctcaataaa
tttaaccctatgggagacacactggcttctggcatgggctttaatattctgatctggaac
caggaggagatggcagccaagaagcatgaacgtcttttgaaagccatgacagacacagag
atggaaccatga

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