Oenanthe melanoleuca (Eastern black-eared wheatear): 130253950
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Entry
130253950 CDS
T09236
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oma03021
]
130253950 (SCAF4)
03041 Spliceosome [BR:
oma03041
]
130253950 (SCAF4)
Transcription machinery [BR:
oma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130253950 (SCAF4)
Spliceosome [BR:
oma03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
130253950 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
130253950
NCBI-ProteinID:
XP_056348988
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All DBs
Position
1:1877003..1907052
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AA seq
1139 aa
AA seq
DB search
MNNFRGCVVPALLPLRSCVCAGVQGIKSSSQTDPFSACVAWSCAGRAMQADVKCEEGQIY
GQLFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDS
IVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEII
QPLLDMAAGTSATAPMAENATNNEGSPPPPAKVPSEPPQVTANSVPSVPQLPSSDAFAAV
AQLFQTTQGQQLQQILQTFQQPQKPQSPVIDNTVMAQVQAITAQLKTTAAQPPEQKAAFT
APEQKTSFDKKLLDRFDYDDEPEAVEDSKKEDSAPSPSVSQPALTSLSFSAQAGWCSMPG
GFPGEGMQQPVFPQLPNMDPFQQRMMGMQQDPMRHQVPLPPNGQMPGFGLLPTPQFPPMA
QPVMPPAAPVQPTFQSPFPVQAEPHLQKPHQQDMEVEQPPIQEGKRHVSDSRKSRSRSAS
RSPKRRRSRSGSRSRRSRHRRSRSRSRERRRHSPKSRSQERRERERDRERRSKGLPQIKA
ETVSVCSTTLWVGQLDKRTTQQDVGSLLEEFGPIESINMIPPRGCAYIVMVHRQDANRAL
QKLSRGNFKVNQKSIKIAWALNKGIKPDYKQYWDVELGVTYIPWDKVKPEDLESFCEGGM
LDNETLSPEWKGIPKKSENEVAQNGGAEAAHNEPVSPIPKALPVPIPVPMPAPITVPPPQ
VPPHPSGPPVVGALQPPAFTAPLGIPPPGFAPGVPPPPPPPFLRPGFNPLHLPPGFLPPG
PPPPITPPVSVPHTPAVNIPNSTATGGNEDATKESSVGNPIPTVVSGGRGNAESTDTSKI
YGTVPPPVAPTNVPAPVTQAVPLLGTQGVAPPPPAPVVGLQTPSTGLLGARPGLIPLQRP
PGMPPPPPLPRFPMMPPRHMPPHMMHRGPPPGPGSFGMPPPHGMKTPFPPPGHFVRPGGG
PGGGGPEENRDGRQFRNDRQYTPNRDQERFGRRSFGSRDNDRERYGGRDEREHERPSGRD
RRDWGRRSPERDRHRDSEDRNRRSSGHRDRERDSRDRESRRDKEESRGKEKPEVTDRAEG
DKNHEPHGSKTEGAELVSELAAGDAEPAGAKPAPESLPEATSSLEQADKDTGSAAEAPR
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgaataacttcaggggctgtgtggttcctgccctgctccctctcaggagctgtgtttgt
gctggtgtgcagggcataaagtccagttctcagactgatcccttttccgcctgtgttgcc
tggagctgtgcaggcagagcaatgcaggctgatgtgaaatgtgaggagggtcagatttac
gggcagctcttctcactgatggagatgaaacctcctatttcccgagcaaagatgattctc
atcacaaaagctgccattaaagctattaagctctacaagcatgttgtccagattgtggag
aagtttatcaaaaagtgcaagccggagtacaaagtgccgggcttgtacgtcatcgactcc
atcgtgcggcagtcccggcaccagttcggaacagacaaggacgtctttgggcccaggttc
tccaagaacattactgccacattccagtatttgtatctgtgtccatctgaagacaagagt
aaaatagttcgtgtcctgaacctctggcagaaaaatggagtatttaaaattgaaatcatt
cagcctctcttggatatggcagcaggaaccagtgccactgcacccatggcagagaatgct
actaacaatgaaggttcaccgccccctccggccaaggttccctcggagcccccgcaagtg
acggcgaactccgtgcccagtgtgccacagctgcccagctccgatgcctttgcagctgta
gcccagctgttccagacaacacagggacaacagctccagcaaatcctgcagaccttccag
cagcctcagaagccccagtcaccggtcatagacaacactgtgatggctcaggttcaagct
attactgctcagctgaaaaccacagcagcacagcccccagagcagaaagctgctttcaca
gcacctgagcagaaaacatcatttgacaaaaagctgctagatcggtttgactacgatgat
gaaccagaagcagtggaagattcaaagaaagaagattcagccccttccccttcagtgtct
cagccagctttgacctctctctcattcagtgcacaggctggatggtgctcaatgccgggt
gggtttccaggagaaggcatgcaacagccagtatttcctcagctcccaaatatggatcct
tttcagcagcggatgatgggaatgcagcaggatccaatgcggcaccaggtgccacttcct
ccgaatgggcagatgccaggttttggtctcctgcctaccccccagttcccacccatggct
cagccagtgatgcctccagcagcaccagtgcagccaactttccagtctcccttcccagtc
caggctgaaccacacctccagaaaccccaccagcaggatatggaagtggaacagccgccc
attcaggagggaaaacggcatgtttctgacagtaggaaatcaagatctagatctgcatca
aggtcccccaagaggagacgctcgcggtcgggctcgcgctcccggcgctcgcggcaccgc
cgctcccgctcgcgctcccgggagcggcgccggcactcgcccaagtcgcgctcccaggag
cggcgcgagcgcgagcgggacagggagcgccgctccaagggcctgccccagatcaaggca
gagaccgtcagcgtttgcagtaccacactctgggtaggacagctcgacaaaaggacaact
cagcaggatgtgggaagtctcctggaggagtttggccccattgagtcgatcaatatgata
ccgcccagaggatgtgcctacattgtcatggtgcacagacaagatgccaacagagccctc
cagaaactgagccgaggcaacttcaaagtcaaccagaaatccatcaagattgcctgggct
ctgaataaaggaataaagccagactacaagcagtattgggatgtagaattgggtgtgact
tacataccatgggacaaagtcaaacctgaagatcttgaaagtttctgtgaaggaggaatg
ctggacaatgagacccttagtccagagtggaagggaattcccaagaagtctgagaacgaa
gtagctcagaatggaggtgcagaagctgcacacaatgaaccagtgtcacctattcccaaa
gctttacctgtcccaatccctgttcccatgcctgcaccaataacagtacctcctccacag
gttcccccccatccatcagggcctcccgtggttggtgcactccagccccctgctttcaca
gcacctttagggatcccccctcctggatttgcccccggggtgccaccgccgccgccgcct
ccgttcctccggcccggcttcaacccgttgcatttacctccaggattccttcctcccggg
ccaccgcctcccataactcctccggtctctgtcccgcacactccagcagtgaacatccca
aactctacagcaactggtgggaatgaggatgctaccaaggagtcatctgtaggaaatccc
atcccaacagtagtttctggaggcagagggaatgctgaaagtactgacacttccaaaatc
tatggcactgttccacctcctgtagcacctaccaatgtccctgctcccgtcacccaggct
gttccactccttggcacgcagggcgtggcgccgccgccgcccgcgcccgtggtggggctg
cagactccgtccacggggctgctgggcgcccggcccgggctgatcccgctgcagcgcccg
ccggggatgccgccgccgccgccgctgccgcgcttccccatgatgccgccgcgccacatg
ccgccgcacatgatgcacagagggcccccgccgggtcccggcagcttcgggatgcctccc
ccgcacggaatgaaaacgcccttcccgccgcccggccacttcgtgcggcccgggggcggc
ccgggcggcggcgggcccgaggagaacagggacgggcggcagttcaggaacgacaggcag
tacacgcccaacagagaccaggagcggttcggcaggagatccttcgggagccgggacaac
gaccgggagcgctacggcggccgcgacgagcgggagcacgagcggccgagcggccgcgac
aggcgagactggggacgccgcagccccgagcgcgacaggcacagggactcggaggacagg
aacaggcgctccagcggccaccgagacagggagagggattccagggatcgggagtctcgt
agagacaaggaagaatcgcgcggcaaggaaaagccggaggtgacagacagggcggagggc
gacaaaaaccacgagccccacggcagcaaaacggagggcgcggaactcgtttcagaactg
gctgcgggcgacgctgagcccgcgggtgcgaaacccgcgccagagtcgctgcccgaggct
acctcatccctggaacaggcggacaaggacacgggctcggcggccgaggcgccgcgctag
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