Oenanthe melanoleuca (Eastern black-eared wheatear): 130253988
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Entry
130253988 CDS
T09236
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03420
Nucleotide excision repair
oma04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130253988 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
130253988 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oma04121
]
130253988 (DDB1)
03400 DNA repair and recombination proteins [BR:
oma03400
]
130253988 (DDB1)
Ubiquitin system [BR:
oma04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
130253988 (DDB1)
DNA repair and recombination proteins [BR:
oma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
130253988 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
130253988 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
130253988
NCBI-ProteinID:
XP_056349070
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All DBs
Position
5:complement(8882325..8894014)
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
TAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKSLVSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVAC
LDITPLGDSNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcttataactacgtggtgacggcgcagaagccgacggccgtcaatggctgcgtcacc
ggacacttcacctctgccgaggacctgaacctgctgattgccaagaacacccggctggag
atttatgtggtgacagccgaggggctccggcccgtcaaggaagtgggaatgtacgggaaa
accgccgtcatggagctgttccgccccaagggggagagcaaggatttgctgttcatcctg
acggccaagtacaatgcctgcatcctggaatacaagcagaacggggatagcatcgacatc
atcacccgtgcccatggaaatgtgcaggatcgcatcggccgcccctcggagacggggatt
attgggatcatcgatcccgagtgccggatgatcgggctgcggctctatgacggcctcttc
aaggtcatccccctggacagggagaacaaggagttaaaggccttcaacatccgcctggaa
gagctccaggtcatcgacgtgaaattcctttacggctgccaagctcccaccatctgcttc
gtctaccaggacccccagggccgccatgtgaagacatacgaggtgtccctgcgggagaag
gaattcaacaaaggcccttggaagcaggaaaatgtggaggccgaagcctccatggtcatt
gcagtgccggagcccttcggaggcgccattatcatcgggcaggaatccatcacctaccac
aacggggataaatatctggctatcgctcctcccatcatcaagcaaagcaccatcgtgtgc
cacaaccgtgtggatcccaatggatcacggtatttgctgggagacatggaagggcggctc
ttcatgctgctcctggagaaggaggagcagatggatggcactgtcaccttgaaggatctg
cgtgtggagctgctgggagagacatccattgccgagtgtctgacctacctggataatgga
gtggtgtttgttggctccaggcttggagattcccagcttgtgaagctcaacgtggacagc
aacgagcagggatcctacgtggtggccatggagaccttcaccaacctcgggcccattgtg
gacatgtgcgtggtggacctggagaggcaaggccaaggccagctggtcacctgctctggg
gccttcaaagagggatcactgaggatcatccggaatggcatcggaatccatgagcacgcc
agcatcgacctgccgggaattaaaggattgtggccactgaggtcggatccgcaccgggag
acagacaacaccttggtgctgtcctttgttggccagaccagggttctgatgttgaatgga
gaggaagtggaagagacagagctcacaggatttgtggatgaccagcagacattcttctgt
ggcaatgtggcacatcagcagctgatccagatcacctctgcctcagtgcgactggtcagc
caggagcccaaatccctggtgagcgagtggaaagagcccaatgggaagaacatcagcgtc
gcttcctgcaacagcaaccaggtggtggtggctgtgggaagagccttgtactacctggaa
atccggccccaggagctccggcagatcagctgcacggagatggagcatgaggttgcctgc
ctggacatcacgcccctgggagactccaacgggatgtccccactctgtgccatcgggctc
tggaccgacatctccgcccgcatcctgaagctcccgtccttcgagctgctgcacaaggag
atgctgggaggagagattatccctcgctccatcctgatgacaaccttcgagagcagccac
tacctcctgtgtgccctgggggatggagctctcttctacttcggcctcagcctcgagaca
ggcttgctgagtgacaggaagaaggtgaccctgggcacccagcccacggtgctgagaaca
ttccgctccttgtccaccaccaacgtgttcgcctgctccgaccgccccaccgtcatctac
agcagcaaccacaagctggtcttctccaacgtcaacctcaaggaggtcaactacatgtgc
cccctcaattctgatggatatcctgacagtttggccttggccaacaacagtaccctgacc
atcggcaccattgatgagatccagaagctgcacatccgcactgttcccctctatgagtcg
cccaggaaaatctgctaccaagaggtgtcccagtgttttggagtgctctccagccggatc
gaggtgcaggatgccagtgggggcaccacggcgctcagacccagtgccagcacccaggcc
ttgtccagcagtgtgagcaccagcaagctgttttccagcagcacagctccgcacgagaca
tccttcggagaggaggtggaagtgcataacctgctcatcattgaccagcacacctttgaa
gtgctccatgctcaccaattcctgcaaaatgagtacgccctcagtctggtctcctgcaag
ctgggaaaggatcccaacacctacttcattgtgggcactgccatggtgtatcccgaggaa
gcagagcccaagcagggccggatcgtcgtcttccactactccgatgggaagctgcagagc
ttggctgagaaggaggtcaagggagctgtgtattccatggtggaattcaatgggaagctg
ttagccagcatcaacagcacggtccgcctgtacgagtggacagcggagaaggaattgcgc
acggaatgcaaccactacaacaacatcatggccctgtacctgaagaccaagggggacttc
atcctggtgggagacctcatgcgctccgtgctgctcctggcctacaaacccatggaaggg
aatttcgaggagattgcccgggatttcaatccaaactggatgagtgctgtggagatcctg
gatgatgataatttcttgggagcggagaatgctttcaatctgttcgtgtgccagaaggac
agcgcggccacgacagatgaggagcggcagcacctgcaggaagtgggattatcccacctg
ggagagttcgtcaatgtcttttgccacggatcccttgtcatgcagaacctgggagagact
tccacgcccacccagggatccgtgctcttcggcactgtcaatggaatgatcggcctggtg
acatccctgtcggaaagctggtacaacctgctcctggacatgcagaacaggctcaacaaa
gtcatcaaaagcgtggggaagattgagcattccttctggagatcgttccacaccgaacgg
aagacagaaccagccacaggattcattgatggagacctgatcgagagtttcctggacatc
agcaggcccaagatgcaggaagtggtggcaaacctgcagatcgacgatggaagcgggatg
aagagggaagccactgtggatgacctaataaagatcgtcgaggagctgacccggatccat
tag
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integrated database retrieval system
