Oenanthe melanoleuca (Eastern black-eared wheatear): 130254054
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Entry
130254054 CDS
T09236
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma04140
Autophagy - animal
oma04142
Lysosome biogenesis
oma04145
Phagocytosis
oma04148
Efferocytosis
oma05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
130254054 (VPS39)
04142 Lysosome biogenesis
130254054 (VPS39)
04140 Autophagy - animal
130254054 (VPS39)
04148 Efferocytosis
130254054 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
130254054 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oma04131
]
130254054 (VPS39)
Membrane trafficking [BR:
oma04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
130254054 (VPS39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
LIF1_N
DUF4145
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
130254054
NCBI-ProteinID:
XP_056349220
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Position
5:complement(25881194..25904184)
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AA seq
884 aa
AA seq
DB search
MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDVGEVMSSESVCCNRF
EVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTISKAKGASLFTC
DLQQSDSGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFK
RDYYLIRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGVCTQKCALN
WTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHF
VWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRF
DESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQ
KRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRL
ENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQY
LQHLGTENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLNFLIENFKSLTIP
YLEHIIHVWEETGADFHNCLIQLYCEKVQGLMKEYLSSFPADRAPVSAGEEGGDLGDYRK
KLLLFLEKSSCYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAENY
CHKHYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKL
DTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQV
KCIITEEKVCTVCKKKIGNSAFARYPNAIVVHYFCSKEVNTLDT
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagcatgtgccgatcctggagaagctgccgctgcagatcgactgc
ctggcggcctgggaggaatggctccttgtggggaccaaacaagggcaccttctgctttac
aggatcaagaaagatgtaggagaggttatgtcatcagaaagtgtctgttgcaataggttt
gaagtgacactggagaaatccaacaagaacttctcaaagaagattcagcagatccatgtt
gtttctcagtttaaaattttggtcagtctattagaaaataacatttatgtccatgacctg
ttgacatttcaacaaatcaccacaatttcaaaggcaaaaggtgcatctctcttcacttgt
gatctccagcagtcagactcaggggaagaggtgctgaggatgtgtgtggcagtgcgcaag
aagctgcagctttatttctggaaggacagagagttccatgagctgcagggggatttcagt
gtacctgatgtacccaagtctatggcctggtgtgaaaactccatctgtgtaggcttcaag
agggactattacctgatacgggtggatggaaaaggatccatcaaagaactgtttcccaca
gggaagcagctggaaccactggtagctcctgtagcagatggaaaagttgcagttggccaa
gatgatctgacggttgttcttaatgaagaaggggtctgtacgcagaaatgtgccttgaat
tggacagatattcctatagccatggaacaccagcctccctacatcattgctgtgctgcca
aggtacgtggagatccgcactttcgagccccggctgctggtgcagagcatcgagctgcag
aggccacgcttcatcacctctggaggcacaaacattatatatgtggcaagtaatcacttt
gtttggaggctcattccagtgtccatagccacacagatccagcagcttctgcaggacaaa
cagtttgagctggctttgcagttggcagaaatgaaagatgattcagatagtgagaagcga
cagcagattcaccacatcaagaacctttttgccttcaaccttttctgccagaagcgtttt
gatgaatccatgcaagtttttgccaagcttggtacagatcccactcatgtgatgggtctg
tatcctgacctcctgcccacagattacaggaaacagctacagtatcccaaccccctgcca
gggctttctggggcagagctggagaaggcacatttagctctgatagactacctaactcaa
aaaaggagtcagctagtgaagaagctaaatgattctgatcatcagtccagtacctcaccc
ctcatggaaggaacacccacaatcaaatccaaaaagaagctgctacaaatcattgatacc
accctgttaaagtgttacctgcatacaaatgtagcactggtggcacccctgctacgtctg
gagaacaatcactgccatattgaggagagtgagcatgtcctaaagaaggcacacaaatac
agtgagctgataatactgtatgagaaaaaaggtctgcatgagaaagcattacaggtactg
gtggatcagtcaaagaaagctaactcacctttgaagggtcatgagaggacagtgcaatat
ctgcagcatttgggcacagagaacttgcacttggtattttcctactctgtctgggtgcta
agagattttcctgaagatggtctgaagatatttacagaagacctccctgaagtagaagct
ttgccacgagacaaagtgctcaatttcttgatagaaaattttaaaagcttgactattcct
tacctggaacacatcattcatgtctgggaagaaaccggtgcagacttccacaactgtctg
atccagctgtactgtgagaaagtgcagggcttaatgaaagagtatctcagttctttccct
gcagacagagctccagtgtctgctggggaggaaggaggagacttgggggattacaggaaa
aagctgcttctttttctggagaagtctagctgctatgaacctagtcgacttattagtgac
ttcccctttgatggtctcctagaagaacgtgctctgctcttgggtcgaatggggaaacat
gagcaagctctatttatatatgttcatattttgaaagacaccaacatggctgaaaactac
tgccataaacattatgacagaaacaaagatggcaacaaagatgtgtatctgtccctgctc
cgcatgtatctctccccacccagtgttcattgcctgggacccatcaagatggaggtgctg
gagcctcaagccaatctgcaggctgctctgcaggttttggaactgcaccacagcaaactg
gataccactaaggcaataaacctactcccagcaaatacccagattagtgagattcgcatc
ttcttagagaaagtacttgaagaaaatgctcagaagaaaagatttaatcaagtgctcaag
aatcttctccatgcagagtttctgagggtccaggaggagcggatcttgcatcagcaagtc
aagtgcattattacagaggagaaggtgtgcactgtttgtaaaaagaagataggtaacagt
gcatttgctcgataccctaatgcaatagtcgtgcattatttctgctccaaagaagtcaac
acactggacacctga
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