Oenanthe melanoleuca (Eastern black-eared wheatear): 130255308
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Entry
130255308 CDS
T09236
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oma04147
]
130255308 (COL18A1)
00535 Proteoglycans [BR:
oma00535
]
130255308 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
oma00536
]
130255308 (COL18A1)
Exosome [BR:
oma04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
130255308 (COL18A1)
Proteoglycans [BR:
oma00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
130255308 (COL18A1)
Glycosaminoglycan binding proteins [BR:
oma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130255308 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
130255308
NCBI-ProteinID:
XP_056351776
LinkDB
All DBs
Position
7:complement(568564..605099)
Genome browser
AA seq
1750 aa
AA seq
DB search
MAPPRLGFLLLLACCLSCSEPQLLDWVWDSTKTTGSPAAPGKGIPASEPPASAAAPAPSP
SPVRWGGEAAGNVTTPRRQEPDPAAAAPVGEGTTEQWDRSATGLLESTARASTAPPHIMS
PAPGQQVASSSSNKPQLLGTATPKDPQLLGSGNTKDLQLLRMKTTKELQFLGSVSPKELL
GTGTTEDLQLLGSGTTENPQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGMMST
TDLGSVSPEELLGTGTTEDLQLLGSGTTEKPQLLGSGTSKDLQLLGSGTTEKPQLLGSGT
TEDLQLLGQGTTENPQLLGSGTSKDLELLGSETTEDLQLLVMEHTKDPQLLRTGTTKDPQ
LLGQGTTENLQLVAMRSTEETQLLRAVTTESPELLGSTENPQLLTMVTTESAEFLGTGAP
TAVETQVSLQRPAGPQTESLSAEVSLLELIGDPLTEEIHRIYGPDNNPGYVFGPNANTGQ
VARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAVTDSSQSIIYVGVKLSELRAGQQQIIFY
YTEPGSPSSYPAATFTVPTLLNQWTRFAISVEEEEVILYLDCEEHERVRFERSPDEMELE
EGSGLFVAQAGGADPDKYQGVIADLKLRGDPRAAERQCEEEEDDAEVSGDFGSGMEGGQQ
PSGKVEAVPGLVDAVPVTSPPVAGGSGPRSGGGSPQQAERTRAEERLRVSTGDTSRKGEK
GEKGERGLKGDSGTSGIIGPGSVKGQKGEKGDLGVKGSAGFGYPGSKGQKGEPGDPGPPG
THSRHADGLVVEQVTGPPGPPGKDGAPGRDGEPGDPGEDGKPGEMGPPGFPGMPGEPGLK
GEKGDPGVGPRGPPGPPGPPGPPAPPSKNDKLTFIDMEGSGFAGDLESLRGPRGPPGPPG
PPGVPGLPGEPGRFGMNRTDLPGPPGLPGRDGIPGPQGPVGPQGPPGRDGEAGQPGPKGE
QGDVGDLGLPGLPGPKGSKGETGPAGPPGEMGLAGLPGPIGPRGQPGPPGPPGPPGPGYE
AGFSDMEGSGLPFTPGPPGPEGPQGVPGLPGVKGEVGSPGQPGLPGPKGDAGMPGLDGRP
GLEGFPGPQGPKGDKGSTGEKGERGQDGVGLPGPPGPPGPPGQIITVSSEDKSLVAFPGP
EGRPGHAGFPGPVGPKGDQGSTGLQGAPGLKGEKGEPGVIISPDGTVVTAKVKGEKGEPG
LRGPMGPSGPPGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPADVLGSRGLPGPPGPPGPP
GPPGSIVYNNGNTFSDSSHPAFPGFHQFQGQKGEKGDTGPPGPPGQFPYDASHFSASLRG
DKGDAGPKGEKGEPGSTPLYSPGVSGLPGPPGPQGYPGLPGPKGDSIVGPPGPPGPQGPP
GIGYEGRQGPPGPPGPPGPPSFPGPHRQTVSIPGPPGPPGPPGPPGTSGMSLGLRTMPTY
QAMLSAAHELPEGGLVFLSDRQELYVRLRGGFRRVLLEEHSLIPSSALDNEVYDKPPTLH
YAGPQPRGPLHPLRNHVPPATARPWRGDEVVANQHRLPEQPLLHHQHELINGYYIQRRPD
PAPVAAHVHQDFQPALHLVALNTPLSGSMRGIRGADFQCFQQARQVGLAGTFRAFLSSRL
QDLYSIVRRADRAAVPIVNLQDEVLFNNWEALFTGSGAPLRAGTRILSFDGRDVLRDAGW
PQKSVWHGSDAKGRRLPESYCETWRTEERAITGQASSLASGKLLEQVASSCQHTFIVLCI
ENSFMTATKK
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atggccccacctcgcttgggatttctgctcctcctggcttgctgcttgtcctgctccgaa
ccgcagctcctggactgggtttgggacagcacgaagaccacaggaagcccagcagcaccc
ggcaagggaatcccggcgtcggagccgccagcctcggcagcagctccggctcccagcccg
tccccagtgaggtggggtggcgaggcggcagggaatgtcaccactccacggcggcaggag
ccagatcctgctgcagcagcgcctgtgggtgagggaaccacggagcagtgggacaggagt
gccacagggctgctggagagcacggcacgggcaagcaccgctcctccccacatcatgtca
cctgccccaggtcagcaggtggccagcagctccagcaacaagcctcagctcctggggaca
gcgacccccaaggacccacagctcctggggtcagggaacaccaaggacctgcagctcctg
aggatgaagaccaccaaagaactccagttcctgggatcagtgagtcccaaggagctcttg
gggacagggactactgaggatctgcagctcctggggtcagggaccactgagaacccacag
ctgctggggtcagggaccactgagaacccacagctcctggggtcagggacctctaaggac
ctgcagctcctggggtcggggactactgaggacctgcaactcctagggatgatgagtacc
acagacctgggatcagtgagccccgaggagctcctggggacagggactactgaggacttg
cagctgctgggatcagggaccactgagaagccacagctcctggggtcagggacctctaag
gacctgcaactcttggggtcagggaccactgagaagccacagctcctggggtcagggact
actgaggacctgcagctcttgggccaggggaccactgaaaacccacagctcctggggtca
gggacctctaaggacctggagcttctggggtcggagactactgaggacctgcagctcctg
gtgatggagcacaccaaggacccacagctcctaaggacagggaccaccaaggacccacag
ctcctgggccaggggaccactgagaatctgcagctcgtggcgatgaggagcactgaggag
acacagctgctgagagcagtgaccactgagagcccagagctcctgggcagcactgagaac
ccacagcttctgacaatggtgaccaccgagagcgcagagttcctggggacaggagctcct
acagcagttgagacacaggtgtccttgcagagaccggcgggtccccagacagagagcctg
agtgctgaggtcagcctgctggagctgattggggacccactgacggaggagatccacaga
atttatggccccgacaacaaccctggctacgtcttcggtcccaatgccaacacgggccag
gtggcccggtaccacctgccgagccctttctaccgggacttctcgctgctgttccacatc
cagcccaccacaccgcgggccggcgtgctctttgccgtcacggactcctcgcagagcatc
atttacgtgggcgtcaagctctcggagctgcgggcgggccagcagcagatcatcttctac
tacacggagcccggctcgcccagctcctaccctgccgccaccttcaccgtgcccaccctg
ctcaaccagtggacgcgcttcgccatcagtgtggaggaggaggaagttatcctctacctg
gactgtgaggagcacgagcgcgtccgctttgagcgctccccggatgagatggagctggaa
gaaggctccgggctctttgttgctcaggctggaggggctgacccggataaataccagggg
gtgattgcagatttgaagctccgaggggacccgcgggcggccgagcgccagtgcgaggaa
gaggaggatgatgcagaggtctccggggattttggcagcgggatggaaggtggacagcaa
ccctctggcaaggttgaggctgtcccagggctggtggatgctgtccccgtgacctccccc
cccgtggcggggggcagcggcccgaggagtggcggggggtccccacagcaggctgagagg
accagggcggaggagaggctgcgggtctccacaggagacaccagccggaaaggcgaaaag
ggggagaagggagagcgtggcttgaaaggggattcggggaccagtggcatcatagggcca
ggcagtgtcaagggtcaaaagggcgagaaaggagacctgggcgtcaagggcagtgctgga
tttggctaccctggctctaagggccaaaaaggagaaccaggtgaccctggaccccccggg
acgcactctcggcacgctgatggcttggtggtggagcaggtcactggccccccagggcca
ccagggaaggacggagcccctggcagggatggcgagcctggagatcctggcgaggatggc
aaacctggtgaaatggggcccccggggttccctgggatgccgggggagccaggtctgaag
ggggagaagggtgacccaggtgtggggccgaggggaccccctggaccacctggccctcca
ggaccaccggcacccccttccaagaacgacaagctgaccttcatcgacatggagggctct
ggctttgctggtgacctggagagcctgcggggtccacgagggccacctggtcccccaggg
ccacctggcgtgcccggtttgccaggagagccaggacggtttgggatgaaccgcacagac
ctgccgggaccaccggggctgccgggcagggatgggatccctgggccccaggggccagtg
ggtcctcagggtcctccaggaagagacggggaggctgggcagccaggccccaaaggagag
cagggcgatgtgggtgaccttggcctccctggcctgccgggacccaagggcagcaaagga
gaaacaggaccagcaggacccccaggagaaatgggcttagctggccttcccgggcccatt
ggaccgcgagggcagccagggccccccggccccccgggaccaccagggccaggctacgag
gctggatttagtgacatggagggctcggggctgccattcactcctggaccacctgggcct
gaaggaccacagggtgtgccaggactgccgggggtgaagggggaggttggcagccctgga
cagcccggcttgccgggaccaaagggagatgctggcatgcctggcctggatggccgccct
ggcctggagggcttccctggaccacagggacccaaaggtgacaaaggcagcaccggtgag
aagggagagcgaggccaagatggagtggggctgcctggcccccctggcccacctggtccc
cctggacagatcatcactgtgtccagtgaagataagtccttggtggcttttcctggtcca
gagggcagaccaggccacgctggcttcccgggtccggtgggaccgaaaggagaccagggg
tcaactggtctccagggtgccccagggttgaagggggagaagggggagcccggcgtcatc
atcagccctgatgggaccgtggtcactgccaaggtgaaaggagaaaagggggagccggga
ctgcggggcccgatgggaccatcgggtcccccaggacgagcaggaatgaagggagagatc
ggctttccgggcagacccggacgtcccggcatgaatgggctgaagggcgagaagggtgac
cccgcagatgtgctgggctcacggggtcttccaggccccccaggaccccctgggccccct
ggaccccctggcagcatagtctacaacaatggcaacaccttcagcgactccagccatcca
gcattccctggcttccaccagttccaaggacaaaagggagagaaaggtgacactggaccc
ccaggacccccaggacagttcccctacgacgcaagtcacttcagtgccagcctgcggggt
gacaagggggatgcaggtcccaagggtgagaagggtgagccgggcagcaccccactctac
agccctggagtctctgggcttccagggcctccagggccccagggataccccggactgcca
ggtcccaagggggacagcattgttgggccaccggggcctccaggacctcagggtcctcct
gggattggatatgaggggcggcagggcccccctggccctcctggtccgcctgggccaccc
tccttcccaggtccccacagacaaactgtcagcatccctggacccccgggaccaccagga
cctcctggaccaccgggcaccagtgggatgtccttggggctccggaccatgcccacgtac
caggcgatgctgagcgcggcacacgagctgcccgagggtggcctcgtcttcctgagcgac
cggcaggagctctacgtccgcctgcgcgggggcttccgcagggtgctgctggaggagcac
agcctgatccccagttcggctctggacaacgaggtgtacgacaagccgcccaccctccac
tatgccggcccccagccccgtgggcccctgcacccgctccgcaaccacgtccccccagcc
actgcccgtccctggcgaggggacgaggtggtggccaaccagcaccgcctgcccgagcag
cccctgctccaccaccagcatgagctcatcaatggctactacatccagcgcaggccagac
cctgcccctgtggccgcccacgtgcaccaggacttccagcctgcccttcacctggtggcc
ctgaacaccccgctgagcggcagcatgcgtggcatccggggcgccgatttccagtgcttc
cagcaagcccggcaggtcgggctggccggcaccttccgcgccttcctgtcctcgcgcctg
caggatctctacagcatcgtgcgcagggccgaccgtgctgccgttcccatcgtcaacctc
caggatgaagtgctcttcaataactgggaagcccttttcacgggcagcggggccccgctg
cgagctggcacccgcatcctctccttcgatggccgggatgtcctacgggatgcgggatgg
ccgcagaagagtgtctggcatggctcggatgccaagggccggcgcctgcccgagagctac
tgtgagacatggcggacagaggagcgtgcaatcaccggccaggcttcctccctggcctct
ggaaaactcctggagcaggtggccagcagctgccagcacaccttcatcgtcctctgcatt
gagaacagcttcatgaccgccaccaaaaagtga
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integrated database retrieval system
