Oenanthe melanoleuca (Eastern black-eared wheatear): 130255368
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Entry
130255368 CDS
T09236
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130255368 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oma03041
]
130255368 (SF3B1)
03036 Chromosome and associated proteins [BR:
oma03036
]
130255368 (SF3B1)
Spliceosome [BR:
oma03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130255368 (SF3B1)
Complex B
130255368 (SF3B1)
Complex C
U2 SnRNP specific factors
130255368 (SF3B1)
Chromosome and associated proteins [BR:
oma03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
130255368 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
130255368
NCBI-ProteinID:
XP_056351922
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All DBs
Position
7:complement(9950129..9970746)
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatatcgaagcacaaattcgagaaattcaagga
aaaaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagaaatttatggtggaagtgacagcagatttgctggatatgtgacttccattgcagca
actgaattggaagatgatgatgatgactacccttccacaagtttgcttggccagaagaag
ccaggataccatgctccagtggcattgcttaatgacataccacaatctactgaacagtat
gatccttttgcagaacaccgtcctcaaaagattgcggatcgagaagatgagtacaaaaag
cacaggcggatgatgataatttcacctgagcgtcttgatccttttgcagatggagggaag
actccagaccctaaaatgaatgccagaacgtacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcttctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacacctaaaaaattgtccagctgggatcaagcagag
actcctggacacactccatctcttcgatgggatgaaactccaggccgtgcaaagggtagt
gaaactccaggtgccaccccaggctcaaaaatctgggatccaactcccagtcatacacca
gcaggagctgcaacacccggccgggacacacctggacacgcaacaccaggccatggaggt
gccacttccagtgcacggaaaaatcgatgggatgaaacccccaaaacagaaagagatact
ccaggccatggcagtggctgggctgagacacctcgtacagatagaggtggtgactccatt
ggtgagacaccaaccccaggagcgagcaaaaggaagtcacgttgggatgaaacacctgcc
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccatcggtacccca
gctatgaacatggcaacccctacaccaggtcacatcatgagcatgactcctgaacaactg
caggcttggcgctgggagagggaaattgatgagagaaacagacccctttctgatgaggaa
ttggatgctatgttccctgaaggatataaggttctcccacccccagctggttatgtgccc
atccgcactcctgctcggaagctcacagcgactccaacgcccctgggggggatgacagga
ttccacatgcagacagaggaccgcactatgaagagtgttaatgaccagccatctggcaac
ctgccattcctgaaaccagatgatatccaatacttcgacaagctgctggttgatgttgat
gaatcgactctgagtcctgaggaacagaaagagagaaaaataatgaaattacttctgaaa
ataaagaacggcacacctcccatgcgcaaggctgcgttgcggcaaattaccgataaagct
cgggaattcggagcagggcccctattcaatcagatcctgcctctgctgatgtcaccaaca
ctcgaagatcaggagcgtcacttgcttgtcaaagtcattgacagaattctttacaaattg
gatgacttggtccgaccatatgtacacaagatccttgtcgtcattgaaccactgctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttccaacttggctaaggct
gcgggtttggcaacaatgatctccacaatgcgacctgatattgataacatggatgaatat
gtcagaaatacaacagctcgagcctttgctgttgttgcatctgctctgggcattccttct
ctgttacccttcctgaaagctgtctgtaaaagcaaaaaatcctggcaggccagacacact
ggcatcaagattgtgcagcagattgctattcttatgggttgtgctatcctgcctcatctc
aggagcttggttgaaattattgaacatgggctggtggatgagcagcagaaagttcgcacc
atcagcgctttggccattgctgctttggctgaggcagccactccatatggtattgagtca
tttgattctgtcctgaagcccctgtggaagggtatacgtcagcacagaggaaagggtttg
gctgcgtttttgaaggcaattggttacctgattcccctcatggatgccgagtatgcaaac
tactacaccagagaagtcatgctgattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtattgaaggtggtaaagcagtgttgtggtacggatggtgttgaagca
aactacattaaaacagaaatcttgccacccttcttcaaacatttctggcagcacagaatg
gcactggacagaagaaattacagacagttggttgatacgactgtggagctggcaaataaa
gttggagcagcagaaattatttctagaattgtggatgatctgaaagatgaggctgagcag
tacagaaaaatggtcatggaaacaattgagaagataatgggaaatctgggggcagcagac
atcgatcacaaactggaagagcagctcattgatggtattttgtacgcctttcaggaacag
acaacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctaggcaaa
agagtgaaaccctacttgccacagatctgtggtacagttttgtggcgtttgaacaacaaa
tcagccaaagtcaggcagcaggctgctgacctgatctctcgtactgcggtggtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgttttgtatgagtaccttggt
gaagaatatcctgaagtactgggcagcatacttggagcgcttaaggctattgtcaatgtt
ataggtatgcacaagatgacaccaccaatcaaagacctgctgccacggctgacacctatt
ttgaagaacagacatgagaaagtacaggaaaattgtattgatcttgttgggcgtattgca
gacagaggtgcagagtatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gaattattaaaagctcacaagaaagctatcagaagagccacagtgaacacttttggttat
attgcaaaagctattggacctcatgatgtattggccacactgctaaacaacttgaaagta
caggaaaggcagaacagagtatgtactacagtagcaattgctattgtggctgaaacatgc
tcacctttcacagtgctgccagcactcatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtgttaaagtctctttctttcctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccactgcttgaagatgctttaatggacagggatcttgta
cacagacaaactgccagtgctgtggtacagcacatgtcccttggggtttatgggttcggc
tgtgaagattcccttaatcacttgttaaattatgtgtggcctaatgtgtttgaaacctct
cctcacgtcatccaggcagttatgggggctctggagggcctcagagtcgctattgggccc
tgcaggatgttacagtactgtttacagggtttgtttcaccctgccagaaaagtcagagat
gtttattggaagatctataattcaatctacattggatcacaggatgctctgatagcacat
tatccaagaatctataatgatgagaagaacacgtatattcgttacgaacttgattacatc
ttataa
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integrated database retrieval system
