KEGG   Oenanthe melanoleuca (Eastern black-eared wheatear): 130256993
Entry
130256993         CDS       T09236                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
oma  Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma04510  Focal adhesion
oma04512  ECM-receptor interaction
oma04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oma00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130256993 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130256993 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130256993 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oma04147]
    130256993 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:oma00536]
    130256993 (COL4A1)
Exosome [BR:oma04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   130256993 (COL4A1)
Glycosaminoglycan binding proteins [BR:oma00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130256993 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 130256993
NCBI-ProteinID: XP_056355164
LinkDB
Position
1:88315530..88431808
AA seq 1668 aa
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGVSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLVTPGVLKGEKGFPGQPGLPGPPGAS
GFQGPMGPQGPPGEQGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMK
EKGSEIIKGEKGDPGEKGEQGFPGLPGSGFKGDKGEPGKPGPRGKPGKDGEPGLKGEPGL
PGGFGVPGRPGEPGIKGDKGERGYPGPPGRMIDGPVDTFGEKGDPGVSGLPGLKGQKGEK
GFPGAQGIPGPPGRPVPDRVGSPGVPGERGEKGEKGSPGFPSPGIPGRDGFPGLPGPPGP
PGPPGVTDGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGDKGEACALCDKVGPPGLPGP
QGPPGPAGFPGQAGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGAKGEPGDFTYDTILKG
EKGEPGFPGQPGVPGREGRPGKDGFPGPQGPKGVAGTAGLKGERGPPGQPGFPGVRGERG
FPGPPGVGAAGLPGEKGDRGFAGTPGLPGLPGAKGEAGRTISLPGPPGADGLPGPPGFPG
PQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPGLDGL
PGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGSPGLPGLRGEQGFPGIPGQQGFR
GDPGLPGLQGLQGPPGAPGLGPPGLPGPAGQPGPQGPPGFPGVKGERGFPGVPGLDMPGP
KGDKGSPGQPGVPGSVGLPGLPGPQGAVGLKGSAGPKGEMGVMGTPGLPGTPGPVGDRGL
PGEKGSQGFKGVIGPQGDPGVKGDKGEAGLPGKPGTIDNMDMVSLKGQKGDQGEKGDHGE
AGEKGLRGDYGEPGIPGRDGEPGTPGQPGPKGDQGPPGFPGDPGVPGQKGSVGEMGLPGT
PGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGAPGEKGEPGRTGSPGLSGDK
GEKGSAGIPGMPGAPGPKGSPGMAGFPGNPGRHGEKGEKGLPGLSGIPGLKGEPGEPGVP
GPAGAIGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGEVGFPGSPGSPG
IPGLKGEPGYAGPPGPKGNQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGPPGL
KGAKGEQGSNGWPGTPGGPGMKGDPGFQGLPGTPGLPGDIGPKGDLGPPGVPGVPGPKGT
PGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLIKGDPGLPGPVGPVGLKGFPGLPGPKG
QQGVTGPSGVPGPPGSPGFDGQPGQKGEAGPYGPPGPRGFPGPPGPDGLPGAMGPPGAPS
VAHGFLVTRHSQTIEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMP
FLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAPAMVIAVH
SQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGT
CNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRQT
NT seq 5007 nt   +upstreamnt  +downstreamnt
atgcggctctggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtccgcc
gcgggatgttccggttgtggcaaatgtgattgcagtggagtaaaagggcaaaagggagaa
aggggtttgccaggactacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctgggccaccaggacttaagggtgatactggagaaccaggactgccaggaacaaag
ggaacaagaggccccccaggagtatcaggctttccaggaaacccaggccttcctggcatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggcacaaagggt
gaaagaggtccagtaggtcccccaggtttaccaggattgactggaagtataggaccccca
ggacctcctggaatgaagggagatccaggtgaagtgattggtcttgtaactcctggtgtg
ctaaaaggtgaaaaagggtttcctggtcaacctggactgcctggtccacctggagcttca
gggtttcagggaccaatggggccacaaggtcctccaggagagcaaggtcccccagggcca
ccaggacttccaggcgagaagggctacatgggcttgggctttcagggtcccaaaggtgaa
aagggtgaacaaggggtaaggggccccccaggacccccaggaccagcacctcatatgaaa
gaaaaagggagtgaaatcataaagggagaaaagggtgatccaggtgaaaagggtgaacag
ggattcccaggattgccaggttcaggtttcaaaggagacaagggtgaacctggaaagcct
ggtccacgtggaaagcctggaaaagatggtgaaccaggactgaaaggagaacctggtttg
cctggagggtttggtgttccaggacgacctggggagcctggcataaagggtgacaaagga
gagcgaggttatccaggacctccaggaagaatgatagatggaccagtagatacctttggt
gaaaaaggagaccctggagtttcaggtttgcctggattgaaaggtcaaaaaggtgaaaaa
ggctttcctggtgcacaaggaatcccaggacctccaggtcgaccagttccagacagggta
ggatcacctggtgtccctggggagagaggagaaaaaggtgaaaagggttctccaggattc
ccttcacctggcatccctggaagagatggtttccctggcctccctgggccaccaggccca
ccaggacctccaggagtaacagatggaattgatcagtgccagcagggagaacctggtgca
ccaggtagtcctggacttccaggaagagatggatttccaggagagatgggagagaaaggt
gacaaaggcgaggcctgtgccttgtgtgataaagtaggacctcctggacttccaggacca
caagggccaccaggtccagcaggttttccaggacaagctggtttcaagggtgacagaggc
ttacctggacttgatggccttccaggggtgcctggcccccctggcactccaggacttatg
ggcagccctggggcaaaaggagaacctggagattttacttatgatactatcctgaaaggt
gaaaagggagaacctggtttcccaggacagccaggcgttcctggaagagaaggaagacca
ggaaaagatggatttccaggtccccagggtccaaaaggagtggcgggtacagctggcttg
aaaggagaacgtggtccccctggccagcctggattccctggagtgcgtggtgaaagaggc
tttcctggccctcctggggtaggtgctgcaggattacctggtgaaaaaggagacagaggc
tttgctggaaccccaggtttaccaggacttccaggggcaaagggtgaagcaggacgaacg
atatcgctccctggacctcctggggctgatggccttcctgggcctcctggctttcctgga
ccccaaggtgacaaagggaatcccgggcttccaggtagacctggcctaccaggagaaaaa
ggtgctgttgggcagccaggtatagggttccctggacctccaggtcccaaaggtttccaa
ggtcagcctggctcacctggtctgccaggaactccaggaacccctggtctggatggcttg
ccaggagttccaggtttacaaggccaaaagggtgaacctggtgttggtctacctggccct
aaggggttgccaggcccccctggcccagctggaatccctggagaaaagggaagtccaggg
ctgcctggtttacgtggcgagcaaggctttcctggcatacctggacagcaaggattcaga
ggtgaccctggcctcccaggcctccaaggcctgcagggccctccaggagccccggggctg
ggccccccaggactgccaggacctgccgggcagccgggaccccagggaccgccaggattt
cctggagtaaaaggagaaaggggcttccctggtgtcccaggtctagatatgccaggacca
aaaggggacaaaggaagcccgggccagccaggagtgccaggctctgtggggttacctggc
ctgccaggtccccagggggctgtggggctgaaaggatcagcaggacccaaaggagaaatg
ggagttatgggaactcctggattgccaggaacacctggaccagttggagatcgagggtta
cctggtgaaaaaggtagccaaggtttcaaaggtgtaattggaccacagggagatcctggt
gttaagggagataaaggtgaagctggtctcccaggaaaacctggaacaatagacaacatg
gacatggttagcctcaaaggccagaagggagatcaaggagaaaaaggggaccatggagaa
gcaggagaaaaagggctacgtggggattatggagaaccaggaattccagggcgggatggt
gaacctggtactccgggacaaccaggaccaaaaggtgatcaaggcccccccgggttccca
ggagatccaggagttccaggacaaaaaggatcggttggtgaaatgggtttaccaggaaca
cctggagaaaagggtcttcctggagtaccaggttcaccaggcacaccagggttccctggg
caaaaaggtgaaaaaggagacaaaggagcaccaggttttccgggaattggctttccaggg
gctcctggtgagaagggagaaccaggaagaacgggcagtccaggtttatctggagataag
ggtgaaaagggtagtgcaggaattcctggaatgccaggtgccccaggtcccaaaggatcc
cctggcatggcaggatttccaggcaacccaggccgccatggagaaaagggtgaaaaagga
cttcctggcttaagtgggattccaggtttaaaaggagaaccaggtgaacctggtgttccg
ggtcctgctggtgccattggtcagaagggtgaaccaggttatgatgggattccaggtgca
gctggtgcaaagggtgaacaaggtcttccaggtagaggacttccaggatttcccggtgca
aagggagataaaggtgcaaaaggtgaagtgggttttccaggatccccagggagtccaggc
atcccaggtctgaaaggggaaccaggatatgcaggtccaccaggccctaaggggaaccaa
ggtcttcctgggctaccaggaagtgcaattgaaggccctaaaggagacagaggaccccaa
ggccaacctggtcttccaggtttaccaggtccaacagggccaccaggacctccaggtctg
aaaggagccaaaggagagcaagggagcaatggctggccagggactcctgggggtccaggg
atgaaaggtgatccaggtttccaaggactgccaggtacacctggtttgccaggagacatt
ggtcctaaaggtgatctcggacctccaggagttccaggtgtcccaggtccaaaaggaact
cctggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaaggt
ttacaaggcccaccaggtccaccaggtccttttcagcttattaaaggggatcctggctta
cctggacctgtaggaccagttggtctcaagggattcccaggacttccaggtcccaaagga
cagcaaggggtgacaggaccttcaggtgtacctggaccacctggtagtccagggtttgat
ggtcaacctgggcagaaaggagaagctggtccttatggtcccccagggcccagaggattc
cctggtcctccaggccctgatggcttgcctggggccatggggccaccaggggcaccatct
gtggctcatggcttccttgtcaccagacacagtcagaccattgaggagccatcgtgtccg
tttggaacaaggctcatttaccacggatactccttgctttatgtgcaaggcaatgaaaga
gcacatggccaagatctgggcacagcaggaagctgtcttcgtaaattcagtaccatgccc
ttcttattctgcaatatcaacaacgtctgtaattttgcatcaaggaatgactactcctac
tggctgtctactcctgaacccatgccaatgaatatggctcctatcactggtgataatatc
agaccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagctgttcat
agtcaaacaatccaaataccaccatgtcctgaaggctggagttcactttggattggttac
tcctttgtcatgcacaccagtgctggtgcagagggctctggccaggccctggcgtcccct
ggttcctgcctggaggagttccgcagcgctcccttcatcgaatgccatggccggggcacc
tgcaattattatgcaaatgcttacagcttctggcttgccactatagaaaggaatgagatg
ttcaagaaaccaactccctcaactttaaaggccggggatctacgctcgaatgtcagtcgt
tgtcaagtctgtatgagacaaacataa

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