KEGG   Oenanthe melanoleuca (Eastern black-eared wheatear): 130257010
Entry
130257010         CDS       T09236                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
oma  Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03030  DNA replication
oma03410  Base excision repair
oma03420  Nucleotide excision repair
oma03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:oma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    130257010 (RFC4)
   03410 Base excision repair
    130257010 (RFC4)
   03420 Nucleotide excision repair
    130257010 (RFC4)
   03430 Mismatch repair
    130257010 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oma03032]
    130257010 (RFC4)
   03036 Chromosome and associated proteins [BR:oma03036]
    130257010 (RFC4)
   03400 DNA repair and recombination proteins [BR:oma03400]
    130257010 (RFC4)
DNA replication proteins [BR:oma03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    130257010 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    130257010 (RFC4)
Chromosome and associated proteins [BR:oma03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    130257010 (RFC4)
DNA repair and recombination proteins [BR:oma03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     130257010 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    130257010 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 AAA_lid_RFC1 Rad17 AAA_16 AAA_11 AAA_22 AAA_30 SLFN-g3_helicase Mg_chelatase DUF815 AAA_14 AAA_24 RuvB_N AAA_19 AAA_5 TIP49_C AAA_28 CH_2 DNAX_ATPase_lid ResIII AAA_7 ParB
Other DBs
NCBI-GeneID: 130257010
NCBI-ProteinID: XP_056355194
LinkDB
Position
9:20319805..20331788
AA seq 362 aa
MQAFLKGPASISTKPVAAKEKSAAGSSGEGKRTKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLISEGFA
VAQLVNQLHDTIVESEDYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQQLTQ
NT
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaagggcccggcctctatcagcaccaagcccgtcgctgccaaggaa
aagagcgcggccgggagcagcggggagggcaagaggaccaaacctatcccctgggtggag
aaatatcgccccaaaaatgtggatgaagttgccttccaggatgaagttgtagctgtgctg
aagaagtccctggaaggtgctgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagctgctagagaactgtttgggcctgatttattccgg
caaagagtccttgagttaaatgcttctgatgagcgtgggatccaagtgattcgggaaaaa
gtgaaggcttttgctcagctaacagcgtctggaagccgttcagatggtaaaatgtgtcct
ccttttaaaattgtgatcctggatgaagcagactctatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacgtttctgtcttatttgtaactac
atcagcagaataattgaacctttaacgtctcgatgctccaaattccgcttcaagcctttg
tctgacagtatccagcagcagaggctgttggatgtttctgagaaggaacatgtgaaaatc
agtaatgaggcagtatcatatctggtgaaagtgtcagaaggggacttaagaaaagcaatt
acttttcttcaaagtgccactcgcctaatgggtgggaaggagatcacagagaagataatc
actgaaattgctggggtcatccctaaagaaacaattgatgaactgctgttgggctgccag
agtggttcctttgagaaactggaaacactggcaaagaatctcatcagtgaggggtttgct
gttgctcagcttgtaaaccagctgcatgacaccattgtggagagtgaagattacagtgac
aagcagaaatctgccatagttgagaaacttgcagaagtggacaaatgcttggcagacggt
gctgatgaattcttgcagctgatgagtctctgtgcccttgtgatgcagcagctcacacag
aacacctga

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