Oenanthe melanoleuca (Eastern black-eared wheatear): 130257864
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Entry
130257864 CDS
T09236
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130257864 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oma03019
]
130257864 (EDC4)
Messenger RNA biogenesis [BR:
oma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130257864 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
130257864 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40_Prp19
WD40_CDC20-Fz
WDR55
RnlA-toxin_DBD
Motif
Other DBs
NCBI-GeneID:
130257864
NCBI-ProteinID:
XP_056356761
LinkDB
All DBs
Position
11:6670269..6701965
Genome browser
AA seq
1402 aa
AA seq
DB search
MASCSSIDIEDATQHLRDILKLDRPGGSVNENQRPSNSYNGDLNGLLVPDPLGSGDGPAL
AKPVHRSISLGALQEKQVICLSGDDSSTCLVISAKDVEIVASSDSSITSKARGSNKVKIQ
PVARYDWEQKYYYGNLIAVSNSYLAYAIRAASNGSAMVRVLSVSTAERTLLKGFTGGVAD
LAFAHLNSNQLACLDEAGNLFVWRLAMDKEKIQEEILVNIKRPDNTPLNTFRRIIWCPFI
PDDNEENGEEGSQTLALLHEDRAEVWDLDIIRTNNSSWPVEVPDIKEGFIVVKGHSTCLS
EGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMSILPSLKVCLDLSAEYL
ILSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAE
EENDTLSVEGTQGSGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTSASMPSHSSH
EEFAFPDHMADMSTEGLGSEKESVHGSQPDLRRIADLPVPADFLSLSSDAKPKLMTPDAF
MTPSTSLQQIAVSPGSSVSSLTAVTAMSSTSVTDASLPRASEDLTVSPKMQLDTSLTLSS
SSSSLQTSPRSHSVLIPGLPDKLTPKAPVPVTPGNSSLALELQEVEPLVVPQASPTRERS
PDVISSASTAMSQDIPEIASETLQRSFAAAPAALPGEALEPGHHADSMASAASALHLLSP
RNRHSSEHSHHSLDMPPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETRN
SMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKAS
AQRLPVKDWKVKASPRASPKLKRKGKKDDGDMNQSPRSSNNQVTAEFQDELMCILRSQQR
ELSELRQNQMELLQRLTDHLDAIQSSLMGHIERVMDSQQEQEQRRLDRVLLEGQQRNGQL
QEHLSQQLSQSLSTAVCNRLERTIREEMKKTVPQCISKSMDPTVSQLSNTVAAKLTAVEG
TLKENITKLVKSKNLTDSVVRATADTLQGPIQSAYREAFQSVVLPAFEKSCQSMFQQIND
TFKQGTQEYIQQLEAHLKNKKVREQEVREPLLNQLRQLISTFQSSTEQLASTIAASVHAE
VQHQLHIIVGNMQESILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSTHM
DFQSQQTHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQHPCPLSQPVLL
SLIQQLSSDLGTRTELKLNYLEDAVMHLDQSDPITRDHMGSVMNQVRQKLFQFLQVELHN
PLSKPARRLMIMLQGLVTPGMT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgctccagcatcgacatcgaggacgccacccagcacctgcgggacatcctc
aagctggaccggccgggaggttcggtgaatgagaaccagagaccgtcaaattcctataac
ggggacttgaatgggctgctggtgcctgatccccttgggagtggagatggacctgctttg
gccaagccagtgcatcgcagcatctctctaggagccctccaggaaaaacaagtcatctgc
ctttctggtgacgacagctccacatgcttagtgatatcagcaaaagatgtggagatagtg
gccagcagtgattccagtatcaccagtaaggccagagggagtaacaaggtgaaaatacag
cccgttgctagatatgactgggagcagaaatactattatggcaatctgatagctgtttca
aactcttacctggcttatgccattagagctgccagcaatggctctgctatggtgcgggtg
ttgagtgtcagcactgctgaacggaccttgctgaagggattcacaggaggcgtggcagac
ctggcctttgctcacctcaactccaaccagctggcctgcctggacgaggctggcaacctt
tttgtctggcgcctggccatggataaagaaaaaatccaagaggagatcttggttaacatc
aagcgacctgacaacaccccactgaacaccttccgaagaatcatctggtgccctttcatc
ccggacgataacgaggagaacggggaggagggcagtcagacgttggcattgctgcatgag
gacagggcagaagtgtgggatttggacatcatccgaaccaacaacagctcctggccagtg
gaagtgcctgatatcaaagaaggtttcattgtggtgaaaggccacagcacgtgcctgagt
gagggagcactttctccagatggaactgtgttggccacagcaagccatgatggttttgta
aaattctggcagatctatattgagggacaagatgagccaagatgtcttcatgaatggaaa
ccccatgatggtagacctctttcctgcctgctcttttgtgacaaccataaaaagcaagac
ccagaagttcccttctggaggtttctcatcacaggagctgatcagaacagagaactgaag
atgtggtgcacggtgtcttggacctgtttgcagactgttcgcttttctcctgacatcttc
agctccatgagtattcttcccagcctcaaagtctgcctggacctctccgctgaatatctg
atactgagtgatgtgcagaggaaggtcttgtatgtgatggagttgatgcagaaccaagag
gagggcaaggcttacttcagctccatctcagagttcctccttacccacccagtgctgagc
tttggcatccaggccgtgagccgctgccggctgaggcacaccgaggtgctcccagcagaa
gaggaaaatgacaccttgagtgtagaaggtactcagggctctggggctgttgaatcagca
gcaggtgtgctgataaaactcttctgtgttcacaccaaggccctacaggatgtgcagatt
agattccagcctcttcatagccctgacacaagtgcttccatgccttcccatagctctcat
gaggagtttgcctttccagaccacatggctgatatgagcacagaggggctggggtctgag
aaggagtctgtgcacggctcgcagccagacctgcggcgcatcgctgacctgcctgtgcca
gcagacttcctctccctctccagtgacgccaaacccaagctgatgactccagatgcattc
atgacaccaagtacttctcttcaacagatcgctgtctctccaggcagcagtgtcagttcc
ctgactgcagtcacagccatgagcagcacttctgtcacagatgcctctctgcccagagca
tcagaagacttgactgtgagccccaagatgcagctggacaccagcctcacgctgagcagc
agcagcagcagtctccagaccagtcctaggagccactctgttcttatcccaggcctccct
gacaagctaacaccaaaggcacctgttccagtcacaccaggaaactcctctctagcactg
gaactgcaggaagtggagcccttggtggtgccccaggcttctcccacccgtgagcgctcc
ccagacgtgatctcctctgcttccacagccatgtcccaggacatcccggagatcgcctcc
gagacgctgcagcgcagctttgcggcggctccggccgcgctgcccggggaggcgctggag
cccgggcaccatgcagacagcatggcctcagctgcctctgccctgcacctgctgtccccc
aggaaccgccacagctccgagcacagccaccactctttggacatgcctccagtggaggtg
gacagactgaatgctccatctttactagagactgctttaactcaggaaaatgcgtcttct
gacagtgttgtgagtcagccgtggccagcggctcctgacataacccgggagaccaggaac
agcatggcagacagcccaagggatgaggttgaagaaaagcacaagagctcttcctaccat
cgacacagctaccaccttctgcagcatgacagccaggatgccagtgcagaacaaagtgac
catgatgatgaagttgcaagcttggcttctacgtcaggtggatttggtgccaaagcatct
gcgcagaggctgcctgtgaaggactggaaagtcaaggcttccccccgggcttccccaaag
ctaaagaggaagggcaagaaagatgatggggatatgaaccagtcaccaagatcatctaac
aaccaggtgacagcagagttccaggatgagctgatgtgcatcctgaggagccagcagcgg
gagctctccgagctgcggcagaaccagatggagctgctgcagcgactcacggatcacctg
gatgccatccagagctccctcatgggccacattgagagggtgatggactcccagcaggag
caggagcagaggaggctggaccgggtgctgctggaagggcagcagcgcaatgggcagctg
caggagcacctgtcccagcagctgtcccagtccctgtccacagctgtgtgcaaccgactg
gagaggaccatccgggaggagatgaagaagacagtgccccagtgcatttccaaaagcatg
gaccctactgtcagccagctcagtaatactgttgctgccaagctcactgctgttgaaggg
acacttaaagagaatattaccaagctagtgaaatcaaagaaccttacagacagtgttgtg
agggccacagctgacactctgcagggacccatccagtcagcctacagggaggccttccag
agcgtcgtgctgccagcctttgagaagagctgccagtccatgttccagcaaatcaatgac
accttcaagcagggcacacaggaatatatccagcagctggaggctcacttgaagaacaag
aaggtacgagagcaggaggtgcgggagccgctgctgaaccagctgcggcagctcatcagc
accttccagagcagcacggagcagctggcgtccaccatcgcagccagtgtccatgctgag
gtgcagcaccagctgcacatcatcgtgggcaacatgcaggagtctattttggcccaggtg
cagagagtcattaaaggagaggtgagcctggctatgaaggagcagcaagcagctgtcacc
tcgagcatcgtccaggcaatgcgctcggcagccgggacacccatcccctctactcacatg
gatttccagtcccagcagactcacatccttcagctgctccagcagggacacctcaaccaa
gctttccagcaggctctaacagcagcagatctcaacctagttctgtatgtctgtgagact
gtggatactcagcaagtatttggacagcatccatgcccactgtcccagcctgtgctgctc
tccctcattcagcagctctcctcagatctgggcactcgtacagagctgaaattgaactac
ttggaggatgcagtgatgcacctggaccaaagcgaccccatcacccgagaccacatgggg
tcagtcatgaaccaggtgcggcaaaagctcttccagttcctccaggtggaactgcacaac
cctctgagcaaacccgcgcggcgcctcatgatcatgctgcagggcctggtcacccctggc
atgacctag
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integrated database retrieval system
