Oenanthe melanoleuca (Eastern black-eared wheatear): 130258346
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Entry
130258346 CDS
T09236
Symbol
XPC
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
130258346 (XPC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oma03400
]
130258346 (XPC)
DNA repair and recombination proteins [BR:
oma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
130258346 (XPC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
130258346
NCBI-ProteinID:
XP_056357599
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Position
12:9477580..9486819
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AA seq
965 aa
AA seq
DB search
MARKRRASPRPAAAKKRRSGRLRKKDDEEEEEKEEGEEDDFEEKKPSIKKSSKAPSKKKE
EDCDAEVSNSAKTSKPSKPEEAKSQIKESKKNARNKENCIKEETCSDSLKCPQKEVKLKT
ESPIKKEMDEDDTDNDDDDDDESEDEWEDVEELQEPATDKLEEAAVLPSVGLPSNPVEIE
IETPEQMKKRERREKRKAEFEMYLRRMMKRFSKEVREDTHKVHLLCLLANGFYRNRICSQ
PDLLAIGLSIIPTRFTQVPAGQMGLVYLSNLVKWFVGTFTVNDELSTEKVEPLQSTLERR
FAIYTAQDDEELVHIFLIILRALQLLCRLVLSFQPIPLKETRPKGKSSSKRLSHSSTSEG
QESSATTPKAVAKKCPCKTAKQDEKSSEGKENNKEPKTAQTERTLKSKSTKGSQEQKESN
NETSSAEKDVPVRPKNNRRRRVASKVCYKEESGSDEGSASEFEVSEEESDVSDEDFETVP
KRRRSSQASQNSKLTTIKRSKTKTSETRLSEKLCGAETKPAKTTTPALPQAQRKRNKIIS
SDEDEGQQEVRKAVGTDQWLEVFLEPEDKWVCVDCVHGNVGQPQLCYAHATKPLFYVVGF
DNDGTVRDVTQRYDPVWMTSTRKSRVDPEWWEETLQPYESPYVERDKKEESEFQLKLQDQ
PLPTAIGEYKNHPLYALKRHLLKFQAIYPESAAILGYCRGEAVYSRDCIHTLHSRDTWLK
QARVVRVGEVPYKMVKGFSNRARKARLAEPANRDRPDLALFGRWQTEEYQPPIAVDGKVP
RNEYGNVYLFLPSMMPVGCVQLKLPNLNRVARKLNIDCAQAITGFDFHGGYSHPVTDGYV
VCEEYKDILVAAWENEQAEIEKKEKEKREKRALGNWKLLTKGLLIRERLKQRYSIKNEPS
APETEKGGGFSSDEEGAPSSESAVGNTAMYWPQNRQLEKQGEKTTKKSKREKRGEAAQLF
PFEKL
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atggccagaaagcgccgcgcatcaccccggcccgcggccgccaaaaagaggcgctccggg
cggctgcgaaagaaggacgatgaggaagaggaggagaaggaggagggtgaggaagatgat
tttgaagagaaaaaacccagtataaaaaagagctcaaaagctccatctaagaaaaaggaa
gaagattgtgatgctgaagtttccaactcagcaaaaacttctaagccttcaaaaccagaa
gaggcaaaatcacaaataaaagaaagtaaaaagaatgctagaaataaagagaattgtatc
aaagaggaaacatgcagtgactcactgaagtgtcctcagaaggaggtgaagttaaagaca
gaatctcctattaaaaaagagatggatgaagacgatactgacaacgatgatgatgatgat
gatgaaagtgaagatgaatgggaggatgtggaagaacttcaggaacctgctacagataag
ttagaagaagctgctgttcttccatcagtgggactaccaagcaatcctgttgagatagag
attgaaaccccagagcagatgaagaagagagagaggagagaaaaaagaaaagctgagttt
gagatgtaccttcggagaatgatgaaacgtttcagcaaggaggttcgtgaggacacacat
aaggttcacttgctgtgtttattagcaaacggtttctataggaacaggatctgcagccag
ccagatctcctcgccatcggtctgtccatcatccccacccgcttcacccaagtgcccgca
ggccagatgggccttgtctacctttccaacttggtgaaatggtttgttggaaccttcact
gtcaatgatgagctttccactgaaaaagtagagccccttcagtcaacactggagaggagg
tttgccatctacactgcacaggatgatgaggagcttgttcatatatttttaattattctg
cgagcattgcagctgctgtgtcgcctcgtgctgtcttttcagcctattcctctcaaggag
acaagaccaaagggaaagagctcatccaagaggctgtctcacagcagcacctctgagggg
caggagagttctgccacaacacccaaagctgtggcaaaaaaatgcccgtgcaaaacagcc
aagcaggacgagaaatcctcagagggcaaagaaaacaacaaggaaccaaaaactgcacag
actgagaggacactcaagtcaaagtcgactaaaggcagccaggagcagaaggagtcaaac
aatgagaccagttcagcagaaaaagatgtaccagtcaggcccaagaacaaccgcaggaga
cgagtggcctccaaagtgtgttacaaggaagagagtggaagtgatgagggcagtgcttca
gaatttgaggtttcagaggaggagagtgatgtctctgatgaagattttgaaactgtccct
aaaaggcggaggagctcacaggcctcccagaattcaaagctgacaactataaaaaggtca
aaaactaagacttcagaaacaaggctgtcagaaaaattgtgtggagctgagactaagcca
gcaaaaactacaactccagccttgcctcaggcacagaggaaaagaaacaaaatcatttct
agtgatgaggatgagggacagcaggaggtgagaaaagcagtgggcacagaccagtggctg
gaggttttccttgagcctgaggacaaatgggtttgtgtagactgtgttcatggcaatgtg
ggccagccccagctgtgctatgcacatgccacaaagccgcttttctatgttgtgggattt
gacaacgatgggactgtcagggatgtgacacagaggtatgatccagtgtggatgacctca
acaaggaagagccgtgtggaccccgagtggtgggaagagactctgcagccgtatgaaagt
ccctatgtggagagagacaagaaggaagaaagtgagtttcaattgaagcttcaagatcaa
cctctaccaacagcaattggagagtacaaaaaccaccctctctatgcactgaagaggcac
ctcttgaaattccaggccatctatcctgagtcagctgctatcttaggatactgcagggga
gaggctgtctactccagagactgcatacatacacttcactccagggacacttggctgaag
caagctcgagtggtgagggttggagaagtgccttacaagatggtaaaagggttttccaac
cgggcgaggaaggcgcgcctggcagagccggcgaaccgggaccggccggacctggcgctg
tttggccgctggcagacagaggagtaccagcctcccatagcagtggatggaaaggttcct
cggaatgaatatggaaacgtctatctcttcttgccatccatgatgcctgttggctgcgtg
cagctgaaacttccaaacctgaaccgagtggcacggaagctgaacattgactgtgctcaa
gccatcactggatttgattttcatggtggctactcacacccagttactgatgggtatgta
gtgtgtgaggagtataaagacatccttgttgctgcctgggaaaatgaacaagcagaaata
gaaaagaaggagaaggagaagcgtgagaaaagagctctaggaaattggaaactgctgaca
aaaggacttctcatcagggagagactgaagcaacgctactccatcaagaatgagccatca
gcacctgagacagaaaaaggagggggtttctcttctgatgaagaaggagctccgagctca
gagagcgcagtggggaacacggccatgtactggccccaaaatcgccagctagagaaacaa
ggagagaaaacaaccaaaaagagcaagcgagaaaagagaggagaagcagctcagttgttc
ccttttgagaaattgtga
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