Oenanthe melanoleuca (Eastern black-eared wheatear): 130258381
Help
Entry
130258381 CDS
T09236
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oma04121
]
130258381 (PDZRN3)
Enzymes [BR:
oma01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130258381 (PDZRN3)
Ubiquitin system [BR:
oma04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
130258381 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
Sina_ZnF
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Prok-RING_4
zf-TRAF
zf-rbx1
TRAF3_RING
U-box
PDZ_Tricorn
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
130258381
NCBI-ProteinID:
XP_056357673
LinkDB
All DBs
Position
12:2971303..3100683
Genome browser
AA seq
1056 aa
AA seq
DB search
MGFELDRFSGEVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVNCQRIS
TKELNHVLPLKSLILKLDIKCDNHARGCEAVVPLQHLGEHAETCDFSPAKCRNRGCRQVL
NLRDVEAHMRERCEARPAGLCEQGCGLVLTHGERRAGGHGCLRALRAHGAALQARAAALE
KALKKEALRAGKREQSLLSRLAAAQLELQVTALRYQKRFTQYSARLDALARARAASPGKG
EETKALTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDSGPAAKEGGLQIHD
RIMEVNGKDLSKATHEQAVEAFKTAKEPIVVQVLRRAPRPKGFPSAHEPQLVDVGTQTDI
TFQHILALSKMGSPGPVLEPYLLPEDHPSVHEYYDPNDYMGGIHQEMDRDELELEEVDLH
RVNSQDKLGLTVCYRTDDEDDMGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQNREE
AVALLSSEESKNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASML
QQKKQEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSEQENNGDDHTTSSNTLGSQ
KKLTYSHDTLGSGDMQFSNESFISADCTDVDFLGIPVDECERFRELLELKCQVKSASPYS
LYYHNSSLEMSKSDQESVDRELEMLNEELRNIELECLNIVRAHKMQQLKEQYREPWMLHN
SGFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLETSPDNSLRRTA
DGVGCQGSEGAAAHSASQKGLFAGPESREAGAGKCHAAAKDPELGKQLESKERKGSDGSK
SPTQGQKGSGSIASPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCK
DLGQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAISEMKMG
RYWSKEERKQHLVKAKEQRRRREFMMQSRLECLKEQQGAEEKKEMNIIELSHKKMMKKRN
KKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagctggatcgcttcagcggggaggtggatcccgacttcaagtgcaacctg
tgcaacaaggtgctggaggacccgctgaccaccccgtgcggacacgtcttctgcgcgggc
tgcgtgctgccctgggtggtgcagcagggcagctgccccgtcaactgccagcgcatctcc
accaaggagctcaaccacgtcctgcccctcaagagcctcatcctcaagctggacatcaaa
tgcgacaaccacgcgcggggctgcgaggccgtggtgccgctgcagcacctgggcgagcac
gccgagacctgcgacttctccccggccaagtgccgcaaccgcggctgccgccaggtgctg
aacctgcgggacgtggaggcgcacatgcgggagcgctgcgaggcgcggcccgcggggctg
tgcgagcagggctgcgggctggtgctgacccacggcgagcgccgcgccggcggccacggc
tgcctgcgggctctgcgcgcccacggcgccgcgctgcaggcgcgggcggccgcgctggag
aaggcgctgaagaaggaggcgctgcgcgccggcaagcgggagcagtcgctgctgtcgcgg
ctggcggccgcgcagctggagctgcaggtgacggcgctgcgctaccagaagcgcttcacg
cagtacagcgcccgcctggatgcgctggcccgagcccgcgcagcctcccccggcaagggt
gaagaaactaaagctctgactctggtccttcatcgggactctggatctcttggatttaat
attattggtggccggccgtgcgtggacaatcaggatggatcatcaagtgaaggaattttt
gtatccaaaatagttgactctgggcctgctgctaaggaaggagggctgcaaatccacgac
aggattatggaggtcaatgggaaggatctatccaaagccacgcacgagcaggcggtggag
gcgttcaagacggccaaggagcccatcgtggtgcaggtgctgaggagagccccgcgcccc
aagggcttccccagcgcccacgagccgcagctggtggatgtgggcacccagaccgacatc
accttccagcacatcctggccctgagcaagatgggctcgcccggccccgtgctggagccc
tacctgctgcctgaggatcatccatccgtgcatgaatactatgacccaaatgactacatg
ggaggaattcatcaagaaatggaccgggatgagttggaattagaggaagtggatttacac
agagtgaacagccaggacaagcttggcctcactgtctgttacagaacagatgatgaagat
gacatgggtatttatgtgagtgagattgatcccaacagcatcgccgcgaaggacgggcgg
ctgcgggaaggggaccgcattatccagatcaatggcatcgaggtgcagaaccgagaggaa
gctgtggcacttctctccagtgaggagagcaagaatatctccttacttgtggcaagacca
gaaattcagctggatgaaggatggatggatgatgacagaaacgattttctggatgacttg
cacatggacatgttagaggaacagcaccaccaggcaatgcaatttactgccagcatgctt
cagcagaagaagcaggaggaggatggaggcaccacagacacggccactattttgtccaac
cagcacgagaaggacagcggcgtggggcgcacggacgacagcacgcgcaacgacgagagc
tccgagcaggagaacaacggcgacgaccacaccacctcctccaacaccctgggcagccag
aagaagctgacctacagccacgacaccctggggagcggggacatgcagttcagcaacgag
tccttcatctcggctgactgcaccgacgtcgacttcctcggcatccccgtggacgagtgc
gagcggttccgggagctgctggagctgaagtgccaggtgaagtctgccagcccctacagc
ctgtactaccacaacagcagcctggagatgagcaaaagcgaccaggagagcgtcgacaga
gagctggagatgctcaacgaggagctgcgcaacatcgagctggagtgcctgaacatcgtg
cgggcccacaagatgcagcagctgaaggagcagtaccgggagccctggatgctgcacaac
agcggcttcagaaactacaacacgagcatcgacgcgcgccggcacgagctgtcggacatc
accgagctgcccgagaagtccgacaaggacagctcgagcgcctacaacacgggcgagagc
tgccgcagcaccccgctcaccctggagacgtcccccgacaattccctgcgcagaactgcg
gacggcgtcggctgccaaggcagcgagggcgcagcggcacatagcgcctcccaaaagggt
ttgtttgccggcccggagagccgcgaagccggcgctggtaaatgccacgccgccgctaaa
gaccctgagcttggcaagcagctggagagcaaggagagaaaaggcagcgacggcagcaag
agccccactcagggccagaaaggctcgggctccatcgcgtccccctaccaccactctccc
tacaaacatgcgcacatccccgcccacgcccagcactaccagagctacatgcagctgatc
cagcagaaatcggccgtggagtacgcgcagagccagatgagcctggtcagcatgtgcaag
gacttgggccagagcgagcccaggatggagtggaaggtcaaggtcaggagcgacgggacg
cgctacatcaccaagaggccggtgagggacaggctgctgagggaacgcgccatcaagatc
aaggaggagcgcagcgggatgaccacggatgacgacgccatcagcgagatgaagatgggc
cggtactggagcaaggaggagaggaagcagcacttggtgaaagccaaggagcagaggagg
cggcgggagttcatgatgcagagcaggttagagtgcttaaaggagcagcaaggcgcggag
gagaagaaggagatgaacatcattgaactgagccacaaaaaaatgatgaagaagaggaat
aaaaagatatttgacaattggatgacaatccaggaactgctaacccatggaacaaagtca
ccagacggcacgcgggtgtacaattccttcctgtcagtgactactgtataa
DBGET
integrated database retrieval system
