Oenanthe melanoleuca (Eastern black-eared wheatear): 130258658
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Entry
130258658 CDS
T09236
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130258658 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oma03041
]
130258658 (DDX46)
Enzymes [BR:
oma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130258658 (DDX46)
Spliceosome [BR:
oma03041
]
Complex A
U2 snRNP components
U2 related factors
130258658 (DDX46)
Complex B
130258658 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
130258658
NCBI-ProteinID:
XP_056358211
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All DBs
Position
13:complement(12149550..12168272)
Genome browser
AA seq
1043 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRKREDRRSRSRDRDRRRERSRSRDKRRSRS
RDRKRQRRSRSRERERSRERRRSRSRERRRSRSRSRGRRSRSSSPSKNRKTENRSRSKEK
TEGVEVSKEKKKDKDDKEEEKDKDATTNAVATENFDQNKLEEEMRKRKERVEKWREEQRK
KAMENIGELKKEIEEMKQGKKWSLEDDDDDEEETAEGEKEGNEVEDEELDPLDAYMEEVK
EEVKKFNMRSVKGGGGSEKKTGPTVTKVVTVVTTKKAAAESEKKKGELMENDQDAMEYSS
EEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMTQEEVNVYRLE
LEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQTQAIPAIMNGRDLIGIA
KTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRV
VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFD
MGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQH
VIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQY
DRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNK
GYAYTFITEDQARYAGDIIKALELSGNPIPADLEKLWADFKDQQKAEGKLIKKSSGFSGK
GFKFDETEQALANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKDMAAPGTS
NAPTPSAGNAEKLEIAKRLALRINAQKNLGAEAQVMVPFHFKDVMQQATNAILRGGTIQA
PTVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQDGGQNESFKRYEEELEINDFPQTARWK
VTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRL
IKEELIRLQNSYQPTNKGRYKVL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcgagtccaggcactaccggaagcgctctgcgtcgcggggacgctccgggagc
cgctccaggagccgctccccgtcggacaagaggaaacgcgaggacaggcgctccaggagc
cgggaccgcgatcgcaggcgggagcggtcgcgcagcagggacaagagaaggtctcgctcg
cgggacagaaagcgtcaaagacgttcaaggagtagagaaagggaaaggagccgagagaga
agacgatcgcggagccgagagaggaggcgctcgaggagcaggagcagagggagacggtct
cgatcctccagtccaagcaagaacaggaagacagaaaacagatcaagatctaaagaaaag
acagaaggtgtggaagtttccaaagaaaagaaaaaagacaaagatgacaaagaggaagag
aaggataaagatgctaccacaaatgctgtggccactgagaattttgatcagaacaaacta
gaagaagaaatgagaaaacgaaaagaaagagtggagaaatggagggaagaacaacgcaag
aaggcaatggaaaacataggagagctaaaaaaagaaattgaagagatgaaacaggggaaa
aaatggagtttagaagatgatgatgatgatgaggaggaaactgcagaaggagaaaaagaa
ggcaatgaagttgaagatgaggagttagatccattagatgcttatatggaagaagtaaaa
gaagaggtcaagaagttcaatatgagaagtgtgaaaggtggaggtgggagtgaaaagaaa
actggaccaactgttaccaaggtggtaactgtggtgacaaccaaaaaggcagctgctgag
tcagaaaagaagaaaggggagctcatggagaatgaccaagatgcaatggagtattcctca
gaagaggaggaagttgatcttcagactgccctgactggctatcagaccaagcagagaaag
ctgctagaaccagtggatcatggaaagatagaatatgaacctttcagaaaaaacttctat
gttgaagtaccagaactagctaaaatgacgcaagaagaggtaaatgtgtaccggctggag
ctggagggaattacagtcaagggaaaaggctgtcccaaaccaataaaaacctgggtacag
tgtggtatttccatgaagattctcactgccctcaaaaaacatggctatgaaaagcccact
ccgattcaaacccaggctatcccagcaattatgaacggacgggatttgattggcattgct
aaaacaggaagtggaaaaactattgcatttctgttgcccatgttcagacatattatggat
cagagagcattagaagaaggagaaggtcccatagctgtcattatgacacctacacgtgag
ttggctttgcagattaccaaggagtgtaagaaattctcaaagacacttgggcttcgagtt
gtgtgtgtttatggaggaacaggaatcagtgagcagatcgctgaactcaaaagaggtgct
gaaattattgtttgcacacctggacgtatgattgacatgttagcagctaacaatggtcgg
gtgacaaacctccgtagagtcacgtacgttgtacttgatgaagctgacagaatgtttgac
atggggtttgagcctcaggttatgcgcattgtagacaacgtcaggcctgaccgtcagact
gtcatgttctctgctacttttcccagagctatggaggccctggctcgcaggatcctcagt
aaacctatagaggtgcaggttggaggcagaagtgttgtctgttctgatgtggagcaacac
gtgattgtcatagaagaagagaacaaatttttgaagttactggagctattgggacattat
caggagaaaggatctgttatcatatttgtagataagcaagaacacgctgatgggttgttg
aaagatttaatgagggcctcttatccttgcttgtctcttcatggaggtattgatcagtat
gacagggacagcatcattaatgacttcaagaatggaacctgcaaacttctggtggccaca
tctgtagcagcgaggggcttggatgtgaagcagctgatgctggtggttaattacagctgt
cccaaccattatgaggactacgtgcaccgagcgggccgcactgggcgagctggcaataaa
gggtatgcatatacatttattactgaggatcaggcacgttatgctggtgatatcattaag
gctttggaattgtccgggaatcccattcctgctgatttggagaagctctgggctgatttc
aaagaccaacagaaggctgagggaaagttgattaaaaaaagcagtggattctctggcaaa
ggttttaaatttgatgaaacagaacaggctttggctaatgaaagaaagaagctacaaaaa
gcagctcttggcttacaagattcagatgatgaagatacagctgttgatattgatgaacaa
attgaaagcatgttcaattcaaagaaaagagtaaaagacatggcagcaccaggcacatca
aatgctcctacaccatcagctgggaacgcagaaaaattggaaatcgcaaaaagattggct
ttgagaatcaatgcacagaagaatcttggagcagaggcacaagtcatggttcccttccac
ttcaaggatgtgatgcagcaggctacaaatgctatcctgagaggaggcacaattcaagct
cctactgtgtctgccaagaccattgcagaacaactggctgaaaaaatcaatgccaagctc
aattatgtacccatagagaagcaggaggaagagaaacaggatggaggacagaatgaatcc
ttcaaaagatatgaagaagaattggagatcaatgacttcccacagactgccagatggaaa
gttacctccaaagaagcactgcagagaatcagtgaatattctgaagctgccattacaatc
aggggaacttacttccctccaggcaaagaacccaaggaaggagaacgaaagatttatttg
gctatagaaagtgccaatgaactggctgtacagaaagcaaaggcagaaatcacacgactt
ataaaagaggagctcatcagattgcaaaattcttaccaaccaaccaacaaaggaagatac
aaagttctatga
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