KEGG   Oenanthe melanoleuca (Eastern black-eared wheatear): 130258769
Entry
130258769         CDS       T09236                                 
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
oma  Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03440  Homologous recombination
oma03450  Non-homologous end-joining
oma04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:oma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    130258769 (RAD50)
   03450 Non-homologous end-joining
    130258769 (RAD50)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    130258769 (RAD50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oma03032]
    130258769 (RAD50)
   03400 DNA repair and recombination proteins [BR:oma03400]
    130258769 (RAD50)
DNA replication proteins [BR:oma03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    130258769 (RAD50)
DNA repair and recombination proteins [BR:oma03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     130258769 (RAD50)
    BRCA1-C complex
     130258769 (RAD50)
   NHEJ (non-homologous end-joining)
    MRX complex
     130258769 (RAD50)
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook SMC_N AAA_21 SbcC_Walker_B AAA_15 ABC_tran AAA_29 DUF2703 AAA_13
Other DBs
NCBI-GeneID: 130258769
NCBI-ProteinID: XP_056358420
LinkDB
Position
13:complement(18270442..18289685)
AA seq 1312 aa
MSRIEKMSILGVRSFGIEDKDKQVITFFNPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGKTFVHDPKVANETDVRAQIRLQFRDVNGELLAVQRSMACTQKGKTPDFKTLESVITR
TKHGEKVSLSSKCAEIDREMISALGVSKAVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALEALRQVRLKQGLKVKECQTELKYLKQNKEKAQEIQDHLINREAQLTASKEN
VTSIENQLEPLKNSLAVVEQNLTKVVRLDNDVKALESRKRQMEKDNQDLQQKMEKVFQGT
DEQLRDRYQNHQRIVKEKEKRLLDYKRDLDRATKECQRFNSEKSELLIERGRLQLQADRH
QEHIVTRDSLIQSLAAQLELDGFERAPLTERHVANFRRLVKDRQERDTEAANRMMREFAQ
KEAMKQKQIDEIRDKKTGLESTIDLKSDIQKKKQAELKNVKCELQQLEGFSDRISELDEE
IGKTEHELEKAERSSNVETLELEVQTLQNEKINLDKALRRLDQEMEQLNLHTATITQMEM
LKKDKAEKEDQIRKVKSRHSEELISLLGYFPNKKQLEDWLHGKNKKINQTRDTLANLNKQ
LASVEYNRTHASNELKKKEAQLSDHEAKLFDVCGSQDFDSDLSKLQDEIEKSSKQRAVLA
GATAVYSQFITQLTEESQSCCPVCQRSFGTEAELQDVISDLQSKLRLAPDKLKSTESELK
RKEKKRDEMMSLKPLRQTVVELQDKEIPDLRNKIQNANRDLTGLKGEIEEQKSLLQTALS
EEEGAKAHLQDITLMERYQTDIRDLERKIAQQEAKLLGVDLTRSVFQVSQEKQEKKHLWD
TVTGKIELKQKLKQDQQSQIQQLKSAVNELKAERLQIVSSMQRRQQLEEQTVELTTEVQS
LCREIKEAKEQVLPLDAKLDELQQEKEELVNKRTASNKETQEKMNGINEKVKDINKYMKE
IENYIQQGKEDYKKQKESELEEVNSHLAACEKQKEKISKEMEMTRQDIDTQKIQERWLED
NLTLRKRNEELKEVEDNIKQLMKEMGEMKVPQMRNEQKKLEEKIESLKRSHHIALGRQRG
FEEEIVRFRKELREPQFKDAEEKYRDMMIVMRTIELVNKDLDLYYKALDKAIMTFHSIKM
EEINKIIRDLWRSIYRGQDIEYIEIRSDVDENVSATDKRRNYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRLHQR
NFQLLVITHDEDFVELLGRSEYVETFYRIKKNIDQCSEIMKCSVSSLNSCVH
NT seq 3939 nt   +upstreamnt  +downstreamnt
atgtcgaggattgaaaaaatgagtatcctcggagtgaggagttttgggatagaagataaa
gacaaacaagttatcacattctttaatccattaactattttggtgggaccaaatggtgca
ggaaaaacgactatcattgaatgtcttaaatacatatccactggtgactttcctcctggc
accaaaggaaaaacatttgttcatgatccaaaggttgccaatgaaactgacgttagagct
cagattcggttacagtttcgagatgtcaatggggagctcctggctgtccagcgctccatg
gcctgcacccagaaaggcaagactccagattttaaaacactggaatctgtcattactaga
acaaagcatggcgagaaggtcagcctgagttccaagtgtgctgaaatagatcgggagatg
atcagcgcccttggtgtctccaaagctgtccttaacaatgtcattttctgtcaccaagag
gaatccaactggcccttaagtgaagggaaggccctgaaacaaaaatttgatgagatcttt
tcagcaacaaggtatatcaaagcacttgaagctctgcgtcaggtacgactgaaacaaggt
ttgaaagtaaaagagtgtcagacagaactgaaatatctgaaacagaataaagagaaagca
caggaaatccaggatcatctaatcaacagagaagctcaactgactgcttctaaagagaat
gtaacatcaattgagaaccagcttgagcctctaaagaactctctggcagtagttgaacag
aatctcacaaaagtagtgagattggacaatgatgtgaaggcccttgagagcaggaagcga
cagatggaaaaagataatcaagatttgcaacagaaaatggaaaaggtttttcaaggaaca
gatgagcaactaagggatagataccagaaccaccagagaatagtgaaggagaaggagaag
agattgttggactataagcgtgatttagacagagccactaaagagtgccagagatttaac
agtgagaaatcagagctgcttattgaacgaggtcgtcttcaactgcaggcagatcgtcac
caggagcacattgtgaccagggattccttaatccagtctctggcagctcagctggagctg
gatgggtttgagagagcacctttaactgaaaggcacgttgccaattttcgcaggctggtg
aaggacagacaggagagagatacagaagcagcaaaccgtatgatgagagaatttgcacag
aaagaagcaatgaaacaaaaacagatagatgaaataagagacaagaaaactggattagaa
agtaccattgacctgaaatcagacattcagaaaaagaagcaagcagagctgaagaatgtg
aaatgtgaattgcagcagttggaggggttttcagacaggattagtgagttggatgaggag
attggcaagacggaacatgagctggagaaggctgagaggagcagcaatgtagaaacactg
gaactggaagtacagactctgcagaatgagaaaataaacctggacaaagctcttaggagg
ttggatcaagagatggagcagttgaatctgcacactgcaacaattacccaaatggagatg
ctgaaaaaagacaaagcagagaaagaagatcagattagaaaagtaaagtcaagacattct
gaggagctgatatcactgctgggatactttcccaataaaaaacagcttgaagactggctt
catgggaaaaataagaagattaatcagacaagggatactcttgctaatcttaacaagcaa
ctggcatcagtagaatataatagaactcatgccagtaatgagctaaaaaaaaaagaagcc
cagttgtctgatcatgaagcaaaactttttgatgtttgtggaagtcaagattttgacagt
gacctgagcaaacttcaggacgaaattgaaaaaagttccaaacagcgagctgtgcttgct
ggagccactgcagtttattcacagttcattacacagctgacagaggagagccagtcttgt
tgtccagtttgccaaagaagttttgggacagaggctgaactgcaagatgtcattagtgat
ctgcagtctaaactgcgccttgccccagacaaactgaagtcaacagagtctgagcttaaa
agaaaagagaaaaaacgtgatgaaatgatgagtcttaaaccactgaggcaaactgtagtt
gaactccaagataaggagattccagacctgaggaacaagatccagaatgcaaacagagat
ttaacaggcctgaagggtgagatagaagaacagaaatcactcctccagacagctttgtct
gaggaagaaggtgccaaagcacatttacaggatataactctgatggaaagatatcagact
gatattagggatcttgaacgaaaaattgctcagcaggaggctaagctgctaggtgttgat
ttaactagaagtgtgtttcaagtaagccaagaaaaacaagagaaaaaacacttgtgggat
acagttactggtaaaattgagttaaagcaaaaactcaagcaggaccagcagagccagatt
cagcagctgaagagtgcagttaatgaactcaaagcagagaggctgcagattgtcagcagc
atgcagcggcggcagcagctggaagagcagactgtggagttaaccactgaagttcagtcc
ttatgcagagagatcaaggaagccaaagaacaggtacttcctttggatgcaaagttagat
gaattgcagcaagagaaagaggaactagtgaataaaaggactgcaagtaataaagaaaca
caagagaagatgaatggcattaatgagaaagttaaagatataaacaagtacatgaaagaa
attgaaaactatattcaacaaggaaaagaagactataaaaagcaaaaggagtctgaactt
gaggaagtaaattctcatttggctgcctgtgagaaacagaaggaaaagataagtaaagag
atggaaatgacccgacaagatattgacactcaaaagatacaggaaaggtggctggaggat
aatctcactttgaggaagcggaatgaggagctgaaagaagttgaagacaatataaaacaa
cttatgaaggagatgggagagatgaaagtcccccagatgagaaatgaacaaaaaaaattg
gaggagaaaatagaatctctgaaaaggagccatcacattgcacttggccgccagcgtggg
tttgaagaggagattgttcgctttaggaaggagctcagagagccacagttcaaagatgca
gaggaaaaatacagggacatgatgattgtcatgagaacaatagagctggtgaacaaagat
ctggacctttattacaaggctcttgataaagcaataatgacatttcatagcataaaaatg
gaagaaattaacaaaataattcgggacctgtggcgaagcatttacagaggacaagatatt
gaatatatagaaattcgctctgatgtagatgagaatgtctctgccactgacaaaagaaga
aattacaattacagggtagtaatggtgaagggagatacagcactggatatgcgaggaaga
tgtagtgctgggcaaaaggtgcttgcttctcttatcattcgccttgctctggcagaaaca
ttctgtctcaactgtggcattctggccctggacgagcctacaaccaacctggaccgcgaa
aacatcgagtccctggcacacgccctggtagagataataaagagccgcttacatcaacgc
aactttcagcttctggtgattactcacgatgaagattttgttgaacttctgggccgttct
gagtatgtggaaacattctacaggataaagaagaacattgaccagtgctctgagatcatg
aaatgcagtgtcagctccctaaactcttgtgttcattag

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