Oenanthe melanoleuca (Eastern black-eared wheatear): 130258951
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Entry
130258951 CDS
T09236
Name
(RefSeq) protocadherin-16-like
KO
K16494
protocadherin beta
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oma04515
]
130258951
Cell adhesion molecules [BR:
oma04515
]
Cadherins
Protocadherins
130258951
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
130258951
NCBI-ProteinID:
XP_056358677
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Position
13:18547505..18555904
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AA seq
1625 aa
AA seq
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MERDSFIANIAKDLGVPLSQLAARKARVVTEGNEQLFRLNQNTGILTARESLDREEICPQ
SDTCTLVFKIFFENPLQLIRGEVEVRDVNDNSPVFPEKEMVLKILETASPGSRFPLESAQ
DKDVGINGLQNYSLEPNPHFSLSIGTTKDGVKYLELVLQSQLDREEQGEWNLLLTATDGG
SPPRSGTAQVRIVVVDVNDNIPVFERETYEVRLVENSPLEQLVVRVAAADPDEGSNGEVR
YAFTQTPERSRQLFQLNPTTGEIRVAGKLDFEEAKSHKMVVKATDGGSLSAHCKVQVEIL
DVNDNAPEIALTSLTASIAEDAPPRTVVALFSVRDRDSGDNGRTECSIDGDLPFSLTPTF
DNYYELRTSAALDRERTAEYNITITATDWGTKRLSSQESIFVQISDVNDNPPEFTQEIYT
MSVTENNSPMLRIGSVKATDADTGKNARVNYALARQEGKEQPEISVNAENGDVYILRPLD
YEKVRALEVTVRAADGGSPPLSAQAVLRVLVRDENDNAPVLLHPPPDSSAAGELVPRWAP
SGYLVAKVVAVDADAGQNAWLSYELAKATEPALFRVGLHSGEVRTARAVTERDAARQKLI
VLVRDRGQPPRSATATLTVALVDGFSEAYLRVSEEAPAAEPDGPLTLYLIASLVCVSALF
LATAVAALVVKVRRARRNETETLPTFPTSATESTAGSLPRSYVYDVCFAAGTVNSEFRFL
RPLLPCFPAGLPPGPGEQRSSVCSQDAATLGGEGGWTAQLRTAPGSAAPAIRAGGAAPSR
AAPFGSRQAVSAALSSLQERRSGLWKGMKLRKSEEPLPRRAAALILVLCVSGMRAETARY
SVPEEAERGSFVANIAKDLGLTGEELLARQARVVPEGEKQYLQLNQHTGDLVVREQMDRE
ELCGQSEPCWVRFEVLLESPLQSFRAEVRLTDINDHAPVFPNKEIVLKMPESTVPGSRFL
LESAHDPDVGNNSLQHYSIGSNEYFLVYTRRRSDGRRYAELVLDRALDREQQAEIAFSIT
AVDGGTPARSGTALIRVVVLDINDNNPVFTQTLYKVSVKENNSEDTVVVVVSASDLDAGT
NGEIIYSIVQNSEENFETFKINSETGQIRLKKPLDYEETKTYEIDVQALDGGGLSTHCKV
EVQVKDVNDNAPEVIITSLTSTLSEAAPPNTVVALFNVRDRDSGDNGRTTCELTGEQPFR
ITLLAADAYALVTSEALDREEVEEYNVTVRARDEGSPILSASKTLLVRLLDVNDNAPTFT
QEVYTMVMKENEPAGRILGHLSATDPDAGENARVRYALVPPPTGALAAASFVSVDAESGT
VRSLRALDYEKVRALEVTVRAADGGSPPLSAQAVLRVLVRDENDNAPVLLHPPPDSSAAG
ELVPRWAPSGYLVAKVVAVDADAGQNAWLSYELAKATEPALFRVGLHSGEVRTARAVTER
DAARQKLIVLVRDRGQPPRSATATLTVALVDDFSDAFHQLGHDPAGGQQPQVAEEEMLTT
YLIASLCCVSSLFVLSVLLLTANTLCKARVRAELPPASPSCYGDGDFTSSGMGVGSTGTL
SPAYRYEMCLTSGSGRSEFQFLRPILPSPHSNSEAGLEKDEEPLRHLQPACDREAHTGST
ATPVF
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atggagcgggattcctttatcgccaatattgcaaaggacctgggggttcctctgagccag
cttgcagctcgcaaggcccgagttgtgaccgaggggaacgagcagcttttccgactcaat
caaaacaccggtatcctgacagcaagggaatcgctggaccgagaggagatctgtccgcag
agcgatacctgcacgctcgtctttaagatattctttgagaatccattgcagcttatccga
ggggaggtggaagttcgtgacgtaaacgacaactcgcccgtgttcccagagaaggagatg
gttttaaaaattttagaaacagcatctcctgggtcccgtttccccctggagagcgcccag
gacaaggacgtgggcattaatggtttgcagaactacagcctcgagccgaatcctcatttc
tccctctctatcggaacaacgaaggatggagtaaaatacctggaacttgtcctacagagc
cagctcgatcgtgaagagcagggagagtggaatttgcttctgaccgccaccgacgggggg
tcaccacccaggtcgggcacggctcaggtccgcatcgtggtggtggatgtcaatgacaac
atccctgtcttcgaaagggaaacctacgaggtgcggctggttgagaacagccccctggag
cagctggtggtcagagtcgctgccgcggatcccgatgaagggtccaacggggaagtgcgt
tatgcctttacccagacaccggagcgatcccggcagctcttccagctgaacccgaccacc
ggtgaaatacgggtcgcgggcaagctggatttcgaggaagcaaaatcccacaaaatggtg
gtgaaagctaccgacggcgggagtctgtctgcgcattgtaaagtgcaggtggagatcctg
gacgtgaatgacaacgccccggagatcgcgctcacctccctcaccgcctccatcgccgag
gacgccccgccgcgcaccgtggtggctctgttcagtgtgcgggaccgggactccggggac
aacggcaggacagagtgttccatcgacggggacttgccgttcagtctcacccccactttt
gataattactacgaactgagaacaagcgccgctctggacagggagaggacagcggaatat
aacatcacgatcacagccacggactggggcacgaagcggctgagctctcaggaaagcatc
ttcgtgcagatatcggatgtgaacgacaaccccccagagttcacccaggaaatttacacc
atgtctgtcacggagaacaacagccccatgctccggatcggcagcgtgaaggccacggac
gccgacacaggaaaaaacgcccgtgtgaactacgcactagcgcgacaggaaggcaaagag
cagcccgaaatatcagtcaacgctgaaaacggagatgtttatatcctccgcccactggac
tatgagaaggtgcgcgccttggaggtgacagtgcgcgcagccgacggcggctccccgccg
ctcagcgcccaggccgtgctgcgcgtgctcgtgcgggacgagaacgataacgcgcccgtg
ctgctgcacccgccccccgacagcagcgcggccggagagctggtgccgcgctgggcaccg
tccggctacctggtggccaaggtggtggcggtggacgcggacgcgggccagaacgcgtgg
ctgtcgtacgagctggccaaggccacggagccggcgctgttccgcgtggggctgcacagc
ggcgaggtgcgcacggcgcgggccgtgacagagagggacgcggcgcggcagaagctcatt
gtgctggtgcgggaccgcgggcagccaccgcgctctgccactgccaccctgaccgtggca
ctggtggatggattctccgaagcttatttacgggtgagcgaggaggcaccggctgccgag
cccgacgggccgctcactctttacctgatcgcctccctcgtctgcgtgtcggctctgttc
ctcgccaccgcggtggccgccctggtagtgaaggtgcggcgggccaggcggaacgagact
gagactttgcccaccttccccacgagcgccacggagagcaccgcgggctccctgccccgc
agctacgtgtacgacgtctgcttcgccgccggcaccgtcaacagcgagttccgcttcctc
aggcccctgctcccctgcttccccgccgggctgccccccgggccgggcgagcagcggagc
tcggtgtgctcgcaggacgcggccaccctcgggggcgaaggcggctggacggcgcagctc
cgcacagctcccggttccgccgcccccgcgattcgggcgggcggggctgcgccatcccgg
gctgctccgttcgggagtcggcaggctgtatcggcagctctatccagcttacaggagagg
agatcgggtctctggaaaggaatgaagctcaggaagagcgaggaaccgctcccgaggcga
gcggcggctctgatccttgtcctttgcgtctcggggatgcgagcagaaaccgctcggtac
tccgtgcccgaagaggcggagagaggctcttttgtagcgaatatcgctaaggatttgggg
ctaaccggtgaggaattattggctcgtcaggctagagtcgttcctgaaggagaaaaacag
tatttgcagctgaaccagcacaccggggatttggtggtgagagagcaaatggaccgggag
gagctgtgtggacagagcgagccctgctgggtgcgttttgaggtgctgctggagagccca
ctgcagtccttccgagccgaggtaagactcaccgacataaatgatcacgctcctgtgttc
ccaaataaagagatagttttaaagatgccggaatcgacagtgccggggtctcggttttta
ttggaaagtgctcacgatccagacgtggggaacaatagtcttcagcattatagcataggc
tcaaacgagtatttccttgtctacacccgacggcggagtgacggcaggagatatgccgag
ctggtgttggatcgagccctggacagggagcagcaggcagaaattgctttcagcatcacg
gctgtggatggtgggactccagcacggtctggcacagctttaatccgcgtggttgtcctg
gatataaatgacaacaacccggtatttacccaaactctgtataaagtctctgtgaaagaa
aataactcagaggataccgtagtggtggtagtgtctgctagcgatttggacgcaggaacg
aatggagaaataatatactccatagttcaaaattcagaggaaaatttcgagacatttaaa
ataaactcagagacaggccagattcgactcaaaaagcctttggattatgaggaaacaaag
acctacgagatagatgttcaggccttagatggagggggcttgtccacgcattgcaaggtg
gaggtgcaggtgaaggacgtgaacgataatgcccccgaggtgatcatcacctctctcacc
agcaccctctccgaagccgccccgccgaacaccgtggtggctctcttcaatgtgcgggac
cgggactcgggggacaatggcaggacgacctgcgagctgacaggagagcagcccttcagg
atcactctgctggcagccgacgcgtacgcgctggtgacatcagaggcactggaccgggag
gaggtggaggaatacaacgtgacagtgcgagctcgcgacgagggttcccccatcctctcg
gcatccaagaccctgctcgtgcggcttttggatgtgaacgacaatgcacccaccttcacc
caggaggtttacaccatggtgatgaaggaaaacgagcccgcggggaggatcctgggccac
ctcagtgccacagatcctgacgcgggagaaaacgcccgagtgagatacgccctagtgccg
ccaccgacgggcgccctagccgcggcatcattcgtgtcagtggacgcggagagtggaact
gtgcggagtttgcgcgcactggactatgagaaggtgcgcgccttggaggtgacagtgcgc
gcagccgacggcggctccccgccgctcagcgcccaggccgtgctgcgcgtgctcgtgcgg
gacgagaacgataacgcgcccgtgctgctgcacccgccccccgacagcagcgcggccgga
gagctggtgccgcgctgggcaccgtccggctacctggtggccaaggtggtggcggtggac
gcggacgcgggccagaacgcgtggctgtcgtacgagctggccaaggccacggagccggcg
ctgttccgcgtggggctgcacagcggcgaggtgcgcacggcgcgggccgtgacagagagg
gacgcggcccggcagaagctcattgtgctggtgcgggaccgcgggcagccaccgcgctct
gccactgccaccctgaccgtggcactggtggacgatttctccgatgccttccaccagctt
ggccacgatcctgcaggcggacagcagccgcaggtggccgaggaggaaatgctcacgact
tacctcatcgcctccctgtgctgcgtctcgtcccttttcgtcttgtccgtcctcctcttg
acggcgaacacgctctgcaaagctcgcgtccgggcagaacttcctcctgcctctcccagc
tgctacggggatggagacttcaccagcagcggcatgggcgtgggcagcacgggcacgctg
tcgccggcttatcgctacgaaatgtgtctgaccagcggctcggggaggagcgaattccag
ttcctcaggcccatcctgcccagccctcatagcaattctgaggctgggctggaaaaggac
gaggagccgctgcgccacttgcagcctgcctgcgacagggaagcccacacggggagcaca
gccactcctgtcttttag
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