Oenanthe melanoleuca (Eastern black-eared wheatear): 130259474
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Entry
130259474 CDS
T09236
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130259474 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oma03019
]
130259474 (PARN)
Enzymes [BR:
oma01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
130259474 (PARN)
Messenger RNA biogenesis [BR:
oma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130259474 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
130259474
NCBI-ProteinID:
XP_056359752
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All DBs
Position
14:complement(9657877..9702379)
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AA seq
639 aa
AA seq
DB search
MEVIRSNFKDNLNKVYEAIEESDFLAIDGEFSGISDGPSVSELTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDDTEEKYIMKSFNFYIFPKPFNRNSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNSTKCPVTIPEDQKKF
VEKVVEQIEDLLKNEESESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIA
ITKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEAPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLK
TQCTPYVSQSRYYCVNSFTGTSTVGKRSMSPIEEETGSDDMEEGEGQNPENDQTDSCADS
LPDGKKRPKKLKKIKTEQVPAAKILGPEHLPKCRQVTIR
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcaggagcaattttaaggataacctaaacaaagtgtatgaggccattgaa
gagtcggacttcctggccatcgatggagagttttcaggaatcagtgatgggccttcagtt
agtgaattaacaaatggctttgacactccagaagaaaggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgatgacacagaa
gaaaagtacataatgaagtcatttaacttctatatttttccaaaaccctttaatagaaat
tcaccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaacggaattccatatttaaatcaggaagaagagaga
cagctaagggaacagtatgatgaaaaacgttctcaagccaatggtgcaggatctctgtca
tacatttctcctaattccacaaagtgccctgtaacaattcctgaagatcagaaaaaattt
gttgagaaagtagtggaacagatagaagacttattaaagaatgaagaaagtgaaagtttg
gaactggagccatgtacaggatttcaaaggaaattaatttatcagaccttgagctggaaa
tatccaaaaggtatccacgtggaaactctagagtcagataagaaggagagatacattgca
attactaaggtagacgaagaggaacgaaaaagaagagagcagcagaaacaagcaaaagaa
caggaagaattgaatgatgctgtaggattttccagagttgttcatgccattgctaattct
ggcaagcttgttattgggcacaacatgctgctggatgttatgcacaccatacatcagttc
tattgtcccctacctgatgacctaagtgagttcaaagaagtaacatcatgtgtctttccc
cggttactggatactaaactgatggcaagtacacaaccttttaaggagatcattaataat
acatcacttgcagaactggaaaagcgtttaaaagaggctccattcagccctcctaaagtt
gaaagtgcagaaggatttccaagttatgatacagcatctgaacagctccatgaagcagga
tatgatgcttacattactggactgtgcttcatttccatggctaatttcctaggttcattc
ctcagtcctccgaaaaaccatgtgtctgctagatcaaaactcattgaacctttttttaac
aagctatttcttatgagagtaatggacataccatatctcaatttggaaggaccagacttg
cagcccaaacgagatcatgttcttcatgttacttttcccaaagagtggaagactagtgac
ctataccaacttttcagtgcctttggtaacattcaggtttcgtggattgatgacacatca
gcctttgtatcattgagccagccagagcaagtacaaatagctgtaaacaccagccggtat
gctgaaagttataggatccagacatatgcagagtatgtggagaaaaaacatgaagaaaaa
caggccaagagaaaatgtacagaagatagttggaaggagatggagaggaagaggttaaaa
acccagtgcacaccttatgtttcccagagtcgatactactgtgttaacagttttacaggt
accagcacagtgggaaagagaagcatgagtcctattgaggaagaaactggttctgatgat
atggaagagggagaaggccaaaatccagaaaatgatcagacagactcctgtgcagattcc
cttccagatggtaagaagagacccaaaaagttgaagaagatcaagacagaacaagttcca
gcagccaagatacttggacctgaacatctgcctaaatgcaggcaggttacaatcagatga
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