Oenanthe melanoleuca (Eastern black-eared wheatear): 130259776
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Entry
130259776 CDS
T09236
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03030
DNA replication
oma03410
Base excision repair
oma03420
Nucleotide excision repair
oma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130259776 (RFC5)
03410 Base excision repair
130259776 (RFC5)
03420 Nucleotide excision repair
130259776 (RFC5)
03430 Mismatch repair
130259776 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oma03032
]
130259776 (RFC5)
03036 Chromosome and associated proteins [BR:
oma03036
]
130259776 (RFC5)
03400 DNA repair and recombination proteins [BR:
oma03400
]
130259776 (RFC5)
DNA replication proteins [BR:
oma03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130259776 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
130259776 (RFC5)
Chromosome and associated proteins [BR:
oma03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
130259776 (RFC5)
DNA repair and recombination proteins [BR:
oma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130259776 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
130259776 (RFC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_16
AAA_24
AAA_22
AAA_11
AAA_assoc_2
DEAD
AAA_14
ResIII
RuvB_N
DUF815
AAA_5
AAA_30
AAA_19
DNAX_ATPase_lid
PhoH
AAA_7
TniB
TIP49
ATPase_2
nSTAND3
AAA_25
Gp44_lid
Thioredoxin_6
AAA_28
Hydantoinase_B
Motif
Other DBs
NCBI-GeneID:
130259776
NCBI-ProteinID:
XP_056360414
LinkDB
All DBs
Position
15:12089789..12092682
Genome browser
AA seq
357 aa
AA seq
DB search
MAPAGGANLPWVEKYRPQALSDLVSHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL
ACARQLYREREFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQ
EEGVDVTEDGMKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNQDFSTAYRKITELKALKGLALQDILTEIHLFVHRGGDRVCLWMILESPNLPLALT
KCFLLSTVDFPPSIRMQLLIKLADIEYRLAAGTSEKIQLSSLIAAFQVTRDLVVAEA
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggcgggcggcgcgaacctgccgtgggtggagaagtaccgtccgcaggcgctg
tccgacctggtgtctcaccgggacatcctcagcaccgtgcagcgcttcatcagcgaggac
cggctcccccatctgctcctctatgggccacccggcaccgggaagacatccaccatcctg
gcctgtgcccggcagctgtaccgggaacgggagttcggctccatggtgctggagctcaac
gcctccgatgaccggggcatcgacattgtccgagggcccatcctgagctttgccagcacc
aggaccatctttaagaaaggctttaagctcgtcatcctggatgaagctgatgccatgacc
caggatgctcagaacgccctgaggagagtgattgagaagttcacagaaaacactcggttt
tgcctcatctgcaactacctctccaagatcattcccgccctgcagtcccgctgcacccgc
ttccgctttggccccctgaccccggagctgatggtgccgcggctgcagcacgtcatccag
gaggagggggtggatgtgaccgaggacgggatgaaggctctggtgacgctctcgagcggg
gacatgcgcagggccctcaatatcctgcagagcacctccatggcctttgggaaggtgaca
gaggagaatgtttacacctgtacaggacaccccctcaagtctgacatcgccaacatcctc
gactggatgctgaaccaggatttttccactgcctaccgcaaaatcacagagctgaaggcg
ctgaagggcctggccctgcaagacatcctcactgagatccatctctttgtgcacagaggt
ggggacagggtctgcctctggatgatcctggagagcccaaacttgcccctggccctcacc
aagtgtttccttctctccacagtcgatttccccccttccatccgcatgcagctgctgatc
aagctggcagacatcgagtaccgcctggctgctggcaccagcgagaagatccagctgagc
tccctcatcgccgccttccaggtcaccagggacctggtggtggctgaagcctga
DBGET
integrated database retrieval system
