Oenanthe melanoleuca (Eastern black-eared wheatear): 130260088
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Entry
130260088 CDS
T09236
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oma03021
]
130260088 (SETX)
Enzymes [BR:
oma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130260088 (SETX)
5.6.2.5 RNA 5'-3' helicase
130260088 (SETX)
Transcription machinery [BR:
oma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130260088 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA_16
ResIII
nSTAND3
DUF4164
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
130260088
NCBI-ProteinID:
XP_056361112
LinkDB
All DBs
Position
17:4567206..4594254
Genome browser
AA seq
2899 aa
AA seq
DB search
MSTCRWCTQSGADTTEFLKHYAAQRLSQEDFEGSNDDLCYCLECVVEYHKAREECPWLHE
DLWDLETSRLVAHMEKSMNEETGEDELFLIDEHGETPLSGFVGPNFENNVRVPLLEILKY
PYLLLHEKVSELCVEVLCRMELSHDSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLGK
VDRDDYYDLEEVLTCLFKVIELGLFENPDIYSSSMFEKGKLILLPAHLYDTANYKNYWLG
ICMLLSVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQL
GSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFRRTKSEPESDYGDDMISCSQIVYNY
NTEKPQKDTGWKAAICPEYCPNMYEDMQTLANMLQSDIGRDLRVHHSTFLWFIPFVQSLM
DLKDLGVAYIVEVIHYLCSEIKDILIERIQQCDKISEFFLLILVSIVELHRSKKCLHLLW
ISSQEWVEAVVRCATLPSRAFTRCSEKAPGLCAKGSAPGSLQAPSSVQHACVQLIRSLLK
EGYQLGQHALCKQYLDKLNLLLRGNRAVGWQLSSQETQELQTCLKQVIRSIKGKALSTSL
AGGSSSNSTALPTLSIKHERNVCDDGYKTSGHERRDLHSPFVMSKEGRDCQENPFQRRKN
AWEEECRDACRSSTSCTSTEGLLMNIKKEPDDLAAQEFIFPQNSLASKLCKKVQENRNSD
LAAGKCSTGDDSNTQHSDFGRGRELDMKCKAEPKTPPYLSAQTHVDSPSSGNCRSMQETS
ANRVFQSRLMPTKQVSREDSSDSSRNEPGVQGKEDDSTLPSLKKVSSEEKSLLSFFKRNT
NVETSNQEQPNLNHLDKYDCKNQFLETSCRDNISTCGYFPFSSENKRDMIRPLSVKCESS
DRLFEFSEYFKRENSSVGKIEEDIVKTVSKDDALSDSQIDRELSKLSLTAYTKSVNFPVE
SLQESSVCHNVSDIKRKVKGAVRSSNEGQSTKCPSGAGGRSNQVIVISDSSDEERGVADK
VWQTKTKDENLFAEESSTSSSISDSDAKKESRAPGSPLLLDDCDSQYFEFETEADVFSAW
QDTQAYAVEATQEYKQDHVSPAAEMSNSDDCLNDNLNDWGYDLHYFSDDATEEAASSIEK
QTGDTSHQKEADDTKEATNSALEESVGKEDAKGQLEKCADKGTAKGFTLDLKLPEPKAST
SSISLASKLALKKNSTSPRKIIAKCKSALVVQRSPKKPPLVKTAKNKTPLQSTTERSQPG
RSMPAVVPPRKVRQSPAPTSTVEKLGLKKGPRKAFDLSQPSLESLAQLRSHGKAAGRIGV
AQKRRTKQIEPQCLSVKRNKKLLVCQERQYLRQARPKRSMKNSALSLESRSKVTKVCAKP
VEQKPRTFELAAIKESVENQREKKREETACPSASERKFENFSVEEVASASEMPHSSDWNR
KWEGNSVVVPPVPMDSGLSSTALGDEEDESSGKGCTVLPECEMKTSKQNGCKSDESSDEG
DDNLFLTQLDPVDMELCSQEESVQDAATGSVTPEEMDVDESLRQNEPSAVVKCKEKDCME
QVEKPGEYCSKHPTTSPGPDHVFAKPSLPPPKIRKPSTTKIFSSASSSRNAAFSKDLEDG
RKLPPPSKSKVNAAKAVVVRPPPYPKPAPAGNPPCTSPSFSNVPQPLSSSNVLQLQNRRY
ENASNISRGPGRETYSSFLGAQQRDYSIFVNQVLKWTYEMFANFSLFGTPDNLLHSIVAS
VPVHFQGYNEYFNTFFPLMMLNAFETLAQEWVENQKVREKSYCFYLENFSADMNTAHFTA
HLRESDLARQLHPKEDDLILLVVHKEKDTFGEDSGMESHIVNHVGLVTRFSRASGYANRQ
KEQQTACHLTVQTRGNLSFFIHKQVKCVVVGSLVTTHRKFKGLLLLSRSPLAKPIINPSY
NDFCPRDLPVASGSAASYMNEYNEDQKRAIETAYAMVKQHPGLPKICLIHGPPGTGKSKT
IVGLLSRVLRENTRNEKTARKKNSKIKPNRFLVCAPSNAAVDELMKKIIIAFKEKCQNKQ
EPLGNCGDIKLVRLGAEKSINSEVRGFSLDKQVEHRMKRKPGDCDQDIQKKKEALDQKLD
MLSRERAMHRCEKRENQMLNDEIGRLAKERQQLASQLKEVRGHSQRVQADIILESDIICC
TLSTSGGSLLESAFSRQGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGDPKQLPP
TVKSVKAQQYGYDQSLMARLQRHLEEQVQRNMLHSLPVVQLTVQYRMHPDICLFPSNYVY
GRTLKTAKSVEENRCSSEWPFQPYLIFDVADGREERDNDSYSNPREVKLVMELIRTIKEK
RKDLGLRRIGIITPYSAQKKKIQEQLDSVFKNNSSPGEVDTVDAFQGREKDCIIVSCVRA
NSSEGSTLAYVQASSTKGSIGFLASLQRLNVTITRARFSLFILGRLQTLMEDKNWNHLIQ
DAQKRGAIIRTTEKNYKKEALRILKLRPPGQPPAKGRTMTSPVVQAGSSSGKRSEPGNSG
NSPRELAAGPGHAVPQGSRGPTQPAGTPAADSNRSSAAASMGAPAADSRRGSAPPYMGVP
TADSNRGSAAASMGAPAADSRRGSAPPSMGAAAADSNRNSAAASVGAPAAGSNRSSAPAL
SGPPAADSRRSSTPAPPGAAAADSRRSSAPALSGPPAAHSRRSSAPVPPGAAAADSRRSS
APPSMGTPAADSRRSSAPAPPGAAAADSRRSSAPAPPGAAAADSRRSSAPAPPGAAALAA
MPEKPRDPRLASLASRTEARGKEQPLKDGPWSAQSNLGAAAQQGLDVSSAARDQICRTEN
AKRTQQTAGQCNVLPTAPPTAQHEAEWRAAVAKSSSRAPSEGGQSSEWNRDSRGLSRRPS
QEAPENTDSGSAKRRKIFP
NT seq
8700 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgccggtggtgcacacagagtggtgctgacaccaccgagttcctgaagcac
tatgctgctcaaaggctgtcccaggaagattttgaaggatccaatgatgatctctgttac
tgcctggagtgtgtggttgaatatcacaaagcaagggaagaatgtccatggttgcatgag
gacttgtgggacttggaaacctcccgccttgttgctcacatggagaaatccatgaatgaa
gaaacaggagaggatgagttgtttctcattgatgagcatggggagacacctctgtctggt
tttgtgggcccaaattttgagaacaacgtgcgagtgcccctgctggaaatactgaaatac
ccatatctgctgctgcatgagaaagtcagtgagctgtgtgtagaagtgctctgtagaatg
gaactaagtcatgactcctttcaggtcttcgagaaatacccaggaatttatctctttttg
gtacacccaaatgaggtgattcgtcgatgggccatcctaacagcaaggaatttaggaaag
gttgacagggatgattattatgacttagaggaagtgctgacttgtttgttcaaagttatt
gagttgggactttttgagaatccagatatttacagctcttctatgtttgaaaagggtaaa
ctcatccttttgccagctcatttgtatgatacagccaactacaagaactattggctggga
atttgcatgttgctgtcagtgctggaagaacaagctatggactctttgttactgggccca
gacaaacaaaatgatttcatgcagtctatacttcacactatggagaaagaagcagctgat
gattccactgaccccttctggcctgccctgcactgtttcatggttattttggatcagctg
ggatctaaagtttggggtcagctgattgatcctgtccaagcctttcaaaccataatcaac
agtgtgagctacaacaatgaaatcaaaaatattcgcagcagcttcaggaggacaaaatct
gaaccagagtcagactacggtgatgacatgatttcttgcagtcagattgtgtataattat
aatacagaaaagcctcaaaaggacactggctggaaggctgccatttgcccagagtactgc
cccaacatgtacgaagatatgcagaccctggctaacatgcttcagtctgacattggcaga
gacctgcgtgtccatcacagcacattcctctggttcatcccttttgttcagtcccttatg
gatctcaaggacttgggtgtagcctatatagtggaggtcatccactacctctgctcagaa
atcaaagatatcctcattgaaagaatccagcagtgcgacaaaatctccgaattcttcctc
ctcatcttagtgtccatagttgagctacacagaagtaagaagtgcctgcatttgctgtgg
atcagctcccaggagtgggtggaggcagtggtgaggtgtgccacgctccccagcagagcc
ttcactcgctgcagcgagaaggcgccggggctgtgtgccaagggctcggcccccggctct
ctccaggcgcccagctcggtgcagcacgcctgcgtgcagctcatccgcagcctgctcaag
gagggctaccagctcggccagcacgccctctgcaagcagtacctggacaaactcaacctc
ctcctgcggggaaatcgagctgtgggctggcagctgagcagccaggaaacccaggagctg
caaacgtgtttaaagcaagttataagaagtataaagggtaaagcactgagcacctctttg
gctggaggaagcagttcaaactcaacagctttgccaactctctctataaagcacgagagg
aatgtgtgtgatgatggatacaagacgagtggacatgagaggagggaccttcattcacca
tttgtcatgtcaaaggaaggcagagattgtcaagagaaccctttccaaaggagaaagaat
gcctgggaagaagaatgtagagatgcatgtaggagttcaacatcttgcacatccacagaa
ggcctcttgatgaatattaaaaaagaacctgatgacttggcagctcaggagtttatcttc
ccacagaattctttggcatcaaaattatgtaagaaagttcaggaaaataggaactctgat
cttgcagcagggaaatgcagtacgggtgatgattcaaacacacagcattcagatttcggg
agaggcagagagttagacatgaaatgcaaagcagaacccaaaacaccaccgtatctgtct
gctcaaactcatgttgattctccatcttcagggaattgcagaagtatgcaagagacaagt
gcaaacagggtgttccagtccagactgatgcccactaaacaggtctccagggaagattcc
tctgactcctctagaaatgaacctggtgtgcaggggaaggaagatgacagtactttgcct
tcactgaaaaaagtatcatcagaagaaaaatcgttgctgtctttctttaagagaaacacc
aatgtggaaacttcaaaccaggagcagcctaatttaaatcatctggataaatatgactgc
aaaaatcaatttttggagacctcttgtagggataacatttcaacgtgtggttattttcca
tttagttcagaaaacaagagggatatgatcaggccattgtcagtgaagtgtgaatcaagt
gacagattatttgagttttcagaatatttcaagagggaaaacagttcagtagggaaaata
gaggaggatattgtgaagacggtttctaaagatgatgctttatcagactcccagattgac
agagagctgagtaaattatctttgactgcttataccaaaagtgtcaattttcctgttgaa
tccctgcaggaaagctcagtgtgccacaatgtgtctgatattaaaaggaaagtgaaaggt
gctgtacgatcttccaatgagggccaaagtaccaagtgtcccagtggtgcaggtggccgt
agcaatcaagtaattgtaatttcagactcttctgatgaagaaagaggtgtggctgacaag
gtgtggcaaacaaaaactaaggatgaaaatctgtttgcagaggaatcttcaacttccagc
agcatttctgatagtgacgctaaaaaagaatcacgggctccaggctctcccctgttgctg
gatgactgtgattctcagtactttgagtttgaaacagaagctgatgttttttcagcttgg
caagatactcaagcgtatgctgtggaagcaactcaggagtataaacaagatcatgtttca
ccagcagctgagatgagtaattcagatgactgcctgaatgataacttaaatgactggggc
tatgacctgcattacttcagtgatgatgccacggaagaagcagccagctcaatagaaaag
caaacaggagatacttctcatcagaaagaagctgatgatacaaaagaagcgactaattca
gccttggaagagtcagttggcaaggaagatgcaaaaggtcagctggagaaatgtgcagac
aaaggtactgctaaaggcttcaccctggatttaaaattgcctgaacccaaagcatctaca
tcttccatctcgttagcttcaaaattggccctcaagaaaaacagcacaagcccacggaag
atcatagcaaaatgtaaatcagcactggtcgttcagagaagtcctaaaaaacctcccctt
gttaaaacagccaaaaataaaacaccgctccaaagcacgacagaacgttctcagcctggc
aggtcaatgcctgctgtggttcctccgaggaaggttcggcagagtcctgctccaacgtca
actgtggaaaagcttggcctgaagaaggggccccgcaaggcgttcgacttgtcgcagccc
tcgctggagagcctggctcagctgcgcagccacggcaaagccgcgggcagaatcggagtt
gcgcagaaaaggagaaccaaacagatcgagcctcagtgtttgtctgttaaacgtaataaa
aaactgctcgtctgccaagagcgacagtatctaaggcaggcaaggcccaaaagaagcatg
aaaaattctgcattaagtttggagagcagaagcaaagttaccaaagtgtgtgcaaagcca
gtggaacaaaagcctcggacttttgaactggcagctattaaagaatctgttgaaaaccag
agggagaaaaaaagagaagagactgcttgtccttctgccagtgagagaaaatttgagaac
ttctctgtggaggaggtggcaagtgcctctgagatgcctcattcttcagactggaacaga
aaatgggagggtaacagtgtggtggttcctcctgtccctatggattcaggtctctcttcc
actgcacttggagatgaggaagatgagtcttcaggaaaaggttgcactgtcctgcctgag
tgtgagatgaaaacctcaaagcaaaatgggtgtaaatcagatgaaagcagtgacgaaggt
gatgacaatctgtttttaacccagttggatcctgtggatatggagttatgttctcaggag
gaaagtgttcaagatgctgctacaggtagtgtgactccagaggagatggatgttgatgaa
agccttcggcagaacgaaccctcagctgttgtgaagtgtaaggagaaagactgtatggaa
caggtggaaaaacctggagaatactgcagtaaacacccaaccaccagcccagggccagat
cacgtgtttgccaagccttctctaccaccacctaaaataagaaagccttccactaccaaa
attttcagctcagcaagttcttcacggaacgcagccttcagcaaagatcttgaggatggc
agaaagttgcccccaccttcaaaaagcaaagtgaatgcggccaaagccgtggtggtcagg
ccaccaccatatccaaaacctgcaccagcaggaaatccaccgtgcacatctccaagtttc
agtaatgtacctcaaccccttagttccagtaatgttctccagctacaaaatagacgctat
gagaatgcttcaaatatttccagggggcctggccgagaaacctactcctcttttcttggc
gctcagcagcgcgattacagcatttttgttaaccaagtcctgaagtggacttacgaaatg
tttgcaaacttcagcctctttggaactccagataatcttctgcattccatagtagcctct
gttcctgtccattttcagggctacaatgaatattttaatacattttttcccttgatgatg
ctcaacgcctttgaaacactggcacaagaatgggtagaaaaccagaaagtaagagagaaa
agttattgcttctacttagagaacttttctgctgacatgaatacagcacattttacagct
cacctacgagagagtgatttggcgaggcagcttcatcccaaggaggatgacttaatcctt
ttggtggtccacaaggagaaggacacttttggggaagacagtgggatggagagccacata
gtgaatcatgttggcctcgtgacaagattttctcgtgcatctggctatgcaaatagacaa
aaagagcagcaaactgcctgtcatcttactgtgcaaacccgaggcaatttatcattcttc
atccataagcaagtgaagtgtgtggttgttggctccctggtgaccacacacagaaagttc
aaaggtctgctgctgctgagcaggagccccctggctaaacccatcataaatccaagttac
aatgacttctgtcccagagatctgcctgttgcctcaggaagtgctgcttcatatatgaat
gaatacaatgaagatcaaaagagagccattgagacagcttatgccatggtaaagcagcac
ccaggacttcccaagatctgccttatccatggaccaccagggacagggaaatcaaaaacc
attgtaggactcctgtctcgtgttctgagagaaaacactaggaatgagaaaacagctcgg
aaaaaaaattccaagattaaaccaaaccgttttctagtttgtgcaccatcaaatgctgct
gttgatgaactcatgaaaaagatcatcattgcttttaaggaaaaatgccaaaacaaacag
gagcctttgggaaattgtggtgacatcaaattagtgcgacttggtgctgaaaaatcaatc
aacagtgaagtccgaggattcagcctggataagcaagttgaacacagaatgaaacgaaag
ccaggtgactgtgaccaggacattcagaagaagaaggaagctctggatcagaagctggac
atgctctctcgagagcgtgccatgcacagatgtgagaagagagagaatcaaatgttaaat
gatgaaattggcagacttgcaaaggagagacagcaactcgcttctcagctgaaggaggtt
cgggggcactcccagagagtgcaggcagacatcatcctggagtctgacatcatctgctgc
acgctgagcaccagcggggggagcctgctggagtcggccttctcccggcaggggctcgat
cccttcagctgtgtcatcgtggatgaggcagggcagtcctgtgaggtggaaacactgatt
ccactgatccatcgctgtaataaacttgtcctcgttggagatcccaaacagctccctcct
actgtcaaatcagtaaaagctcagcagtatggctatgaccagtctttgatggcccgtctg
cagaggcacctggaggagcaagtgcagaggaacatgctgcacagcctgcctgtggtgcag
ctgactgtgcagtacaggatgcacccagacatctgcctcttcccatccaactatgtttat
ggcaggactctaaaaactgccaagtcagtggaggagaacagatgttcttcagagtggcca
ttccagccctacctgatttttgatgtagctgatggtcgtgaggagcgagacaatgactct
tacagcaatcctcgggaagtgaagctggtgatggagttaattagaacaattaaagaaaaa
aggaaggatctgggccttcgtcgcattggaataattaccccttacagtgcacagaaaaag
aaaatccaggaacagctggacagtgtgtttaaaaataacagcagcccaggagaagtggac
acggtggatgcgttccagggccgggagaaggattgcatcatcgtgtcctgcgtgcgggca
aacagctccgagggctccactctggcatacgtgcaggcaagcagcaccaaaggatccatt
gggtttctggcaagcctccagcgactgaatgtcaccatcacccgcgcccggttcagcctc
ttcatcctgggccggctgcagacgctcatggaagataaaaactggaatcacttgattcag
gatgctcagaaaagaggtgccattattaggacaacagaaaaaaattacaagaaagaggct
ctgaggattttgaagctcaggccaccaggacagcccccagccaaaggacggacgatgaca
tctcctgtggtgcaggctggttcttccagtggcaagaggagtgagcctggaaattctggg
aacagcccacgggaacttgctgctggccctggccacgcagtgccccaaggaagccgaggg
cccacacagcctgcagggactccagctgcagattccaataggagcagtgctgctgcatcc
atgggggctccagctgcagattccaggaggggaagtgctcctccatacatgggagttcca
actgcagattccaataggggcagtgctgctgcatccatgggggctccagctgcagattcc
aggaggggaagtgcccctccatctatgggggctgcagctgcagattccaataggaacagt
gctgctgcatccgtaggagctccagctgcaggttccaataggagcagtgcccctgcactc
tcaggccctccagctgcagattccaggaggagcagtactcctgcacccccaggggctgca
gctgcagattccaggaggagcagtgcccctgcactctcagggcctccagctgcacattcc
aggaggagcagtgcccctgtacccccaggggctgcagctgcagattccaggaggagcagt
gcccctccatccatggggactccagctgcagattccaggaggagcagtgcccctgcaccc
ccaggggctgcagctgcagattccaggaggagcagtgcccctgcacccccaggggctgca
gctgcagattccaggaggagcagtgcccctgcacccccaggggctgcagcacttgctgcc
atgccagagaaaccacgggacccaaggctggcaagcctggccagtcgaactgaagccaga
ggcaaggagcagcccttgaaagatggcccttggtcagcccagagcaacctgggagcagca
gcacagcaaggcctggatgtgtcctcagctgccagggatcagatctgcagaacagaaaat
gccaagaggacccagcaaacagcaggacagtgcaatgtgcttcccacagcccctcccact
gctcagcacgaggctgagtggagagcagctgtggccaaaagcagttccagagcccccagt
gaaggaggtcagagcagtgagtggaacagagactcccgtggtttatcaaggagaccatcc
caggaagcaccagagaacacagactcaggctctgccaagagaagaaagatctttccctga
DBGET
integrated database retrieval system
