Oenanthe melanoleuca (Eastern black-eared wheatear): 130260142
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Entry
130260142 CDS
T09236
Symbol
GRIN1
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1 isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma04020
Calcium signaling pathway
oma04080
Neuroactive ligand-receptor interaction
oma04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
130260142 (GRIN1)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
130260142 (GRIN1)
04082 Neuroactive ligand signaling
130260142 (GRIN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oma04040
]
130260142 (GRIN1)
Ion channels [BR:
oma04040
]
Ligand-gated channels
Glutamate (ionotropic)
130260142 (GRIN1)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Rap-GAP_dimer
DUF6724
Motif
Other DBs
NCBI-GeneID:
130260142
NCBI-ProteinID:
XP_056361260
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Position
17:10364537..10403172
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AA seq
988 aa
AA seq
DB search
MSTMRLLLLALLFSSSFARAGCDPKIVNIGAVLSTKKHEQIFREAVNQANKRHGTWKLQL
NATSVTHKPNAIQMALSVCEDLISSQVYAILVSHPPAPNDHLTPTPVSYTAGFYRIPVIG
LTTRMSIYSDKSIHLSFLRTVPPYSHQANVWFEMMRVFNWNHVILIVSDDHEGRAAQKKL
ETLLEEKESKSKKRNYENLDQLSYDNKRGPKAEKVLQFDPGTKNVTSLLLEAKELEARVI
ILSASEDDAATVYRSAAMLNMTGSGYVWLVGEREISGNALRYAPDGVIGLQLINGKNESA
HISDAVAVVAQAVHDLFEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYSEGVTGRVE
FNEDGDRKFANYSIMNLQNRKLVQVGIYNGSNVLTNDRKIIWPGGETEKPQGYQMSTKLK
IVTIHQEPFVYVKPTQADGTCREEFTINGDPVKKVFCTGPNETIPGRPTVALCCYGFCID
LLIRLAGVMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINN
ERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLD
RFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAM
IIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELST
MYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIG
MRKDSPWKQNVSLAILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVA
GGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQRELRRRSKCIPEHALRTS
GIHFGYPRAVAEPDLVSPSPVGKVTLIGTKAIGEDSLPAPGAERGWAPRPAAPAPWRLVL
PACANQQYHPTDITGQLNLSDPSVSTVV
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccatgcggctgctgctgctcgccctcctcttctcgtcgtccttcgcccgcgcc
ggctgcgaccctaagatcgtcaatatcggcgcggtgctgagcaccaagaagcacgagcag
atcttccgcgaggcggtgaaccaggccaacaagcggcacggcacctggaagctccagctc
aacgccacctccgtcacccacaagcccaacgccatccagatggccctgtccgtctgcgag
gacctcatctccagccaggtctatgcaatattagttagtcaccctcctgctcccaacgat
cacctaacaccaacacctgtatcatacacagctggcttctacaggatccctgtcattggt
ctgacaacacgcatgtctatatactctgataagagcatccacctgtcctttttgcgcacg
gtcccaccttactcccaccaggccaatgtctggttcgagatgatgagagtcttcaactgg
aaccacgtcattctgatagtcagcgacgaccacgagggtcgtgctgcacagaagaagctg
gagaccctcctggaggagaaagagtccaagagtaaaaaaaggaactatgaaaacctcgac
caactttcctatgacaacaagcgaggacccaaggctgagaaagtgcttcagtttgaccct
ggaaccaaaaatgtgacatcgctgctgctggaggcgaaggagctggaggccagggtcatc
atcctctctgccagcgaggatgacgcggccacggtgtacagatcagcggccatgctcaac
atgacgggctcgggctacgtgtggctggtgggcgagcgggagatctcgggcaatgccctg
cgctacgccccggacggagtgatcggtttgcagctcatcaatggcaagaacgagtcagcc
cacatcagtgatgctgtggctgtggtggcccaggctgtgcacgacttgtttgagaaggag
aatatcacagacccaccgcggggctgcgtgggcaacaccaacatctggaagacaggaccc
ctttttaagagggtgctgatgtcctccaagtactcagagggtgtcactggccgggtggag
ttcaacgaggatggggacaggaaatttgccaactacagcatcatgaacctgcagaatcgg
aaactggtccaggttgggatctacaacggcagcaatgtcctgaccaatgacaggaagatc
atctggccagggggggaaactgagaaacctcaaggctatcagatgtcaaccaagttgaag
attgtgaccatccaccaagagccctttgtgtatgtgaagcccactcaggcagatgggacc
tgcagggaggaattcaccatcaatggagatcctgttaaaaaggtcttctgcactggaccc
aatgagaccatcccaggccgccccaccgtggcactgtgctgctacggcttctgcatcgac
ctgctcatccgcctggcaggggtgatgaacttcacctacgaggttcacctggtggctgat
ggtaaatttggtacccaagagcgggtgaacaacagcaacaagaaggagtggaatgggatg
atgggggagctgctgagtggccaggcagacatgattgtggctcccctcaccatcaacaac
gagcgggctcagtacatcgagttctccaagcccttcaagtaccagggcctcaccatcctc
gtgaagaaggaaatcccccgcagcaccctggattcgttcatgcagcccttccagagcacg
ctctggctgctggtggggctgtctgtgcatgtggtggcagtcatgttgtacctcttagac
cgattcagcccatttggccggttcaaagtaaacagtgaggaggaggaggaagatgctctg
actctctcctcagccatgtggttctcctggggagtcctgctgaactctggcattggagaa
ggtgctccccggagtttctctgcccgtatccttggcatggtgtgggctggctttgctatg
atcattgtggcttcatacactgccaacctggcagccttcctggtgttagacagacctgag
gagaggatcacaggcattaatgacccccggctgcgcaacccctcggataagttcatctac
gccacggtgaagcagagctctgtggacatctacttccgacggcaggtggagctgagcacc
atgtacaggcacatggagaagcacaactacgagagcgctgccgaggccatccaggcagtg
agggacaacaagctccacgccttcatctgggactcggcagtgctggagttcgaggcctcc
cagaagtgtgacctggtgaccacgggggagctcttcttccgctccggcttcgggatcggg
atgcgcaaggacagcccctggaagcagaacgtctccctcgccatcctcaagtcccacgag
aatggcttcatggaggatttggacaagacttgggtgaggtatcaagagtgtgattcccgt
agcaatgccccagcaacactcacctttgaaaatatggcaggtgtgtttatgctggtggct
ggaggtattgttgccgggatatttttaatattcatagagatagcttacaaaagacataag
gacgcacggaggaagcagatgcagctggcgtttgcggccgttaatgtgtggaggaaaaac
ctgcagagagaactgagaaggaggagcaaatgtatccccgagcatgctctacgcaccagc
gggatacattttggttacccccgtgcggtagcagagccagacctggtctctccgtccccc
gtcggaaaggtcactctcattggcacgaaagcaattggggaggactcgctgccagcgccc
ggcgccgagcgcggctgggccccccggcccgcggcccccgcaccatggcggctggtgctc
ccagcctgcgccaaccagcagtatcaccccaccgacataactggccagctcaacctctcc
gacccctcagtcagcactgtggtgtga
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