Oenanthe melanoleuca (Eastern black-eared wheatear): 130260709
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Entry
130260709 CDS
T09236
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
130260709 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oma03400
]
130260709 (LIG3)
Enzymes [BR:
oma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130260709 (LIG3)
DNA repair and recombination proteins [BR:
oma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
130260709 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
130260709
NCBI-ProteinID:
XP_056362292
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All DBs
Position
19:5569232..5583191
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AA seq
983 aa
AA seq
DB search
MPTGGRALSHAARALGRGTALSCPRPQLPVPRALSCSAGLSPACWCQLLLQPVSLPSPKQ
RRAAGPFPLSLLLGSWLRSACTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGK
IVPNPFTESGGDMKEWYHVKCIFEKLDKARATTKKIEDITDLEGWEELQDEDKEIINKHI
SEANAKTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFIAKPKNSEDAPANSVQQPSLS
AARCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKML
LPGVIKIVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETVRIFFEHSKTCPPAAKS
VLTLQEVDEFLIQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVL
DALDPNAYEAFKASRNLQDVVERVLQNQQESEKVPGLKKTLSVQASLMTPVQPMLAEACK
SIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFP
GGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNNVSLMDRPL
CERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDLKGNYEPGK
RHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCS
GGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFS
RAEAHTADGISIRFPRCTRIRHDKDWQSATNLQQLKELYQLSKEKADFSVTAGEEDESTA
GSSGENDGNSRSSTPHSSITSPPSKSPAKTQKAEESKGVIGSPEKSEEKRGEKRKASELE
DNGKKQPLLDIFTGVKLYLAPSVKDFARIRRYFIAFDGDLVEEFDTASATHVIGDSGDSP
GAVRVTPRWIWECIRKRRLVAPC
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgggcggcagggcgctgtcacacgctgcccgcgctctcggcaggggcactgcg
ctgtcctgccctcgcccgcagctccccgtgcccagagcgctgtcctgctctgccggactc
agccccgcttgctggtgccagctgctgctccagcctgtctccctgccgtccccaaagcag
cgccgtgctgccggcccttttcctctctccctgcttttgggcagctggctgcgctcggcc
tgcacggctgcagaggacatggcagagcagcgctactgtgtggactatgccaagcgaggc
accgcgggctgcaagaagtgcaaggagaagatcgtgaaggggatggtgcgcattgggaag
atcgttcccaatcctttcaccgagtccggaggggacatgaaggagtggtaccatgtcaag
tgcatctttgagaagctggacaaggcccgggccaccaccaagaaaatcgaagacatcaca
gacttggaggggtgggaagagctgcaggatgaggacaaagaaataatcaacaagcacatc
tcagaagccaatgccaagactggaggtaccccgaagaaaaaggtgatagtgcaggcaaaa
ctcactgccacaggacagctgaccacaaaagatccaccaaagaaattctctggattcatt
gccaagccaaagaattcagaagatgcccctgcaaactcagtccagcagcccagcctgtct
gcagccaggtgtgaccccaaacacaaggactgcctgctgcgcgaattccgcaagctctgt
gccatggtggctgagaaacccagctacaatgtgaaaactcagatcatccaggacttcctc
aggaagggatctgcaggagatggttttcatggtgatgtatacctgaccattaagatgctg
ttaccaggtgtcattaaaatagtttacaacttgaatgataagcagattgtaaagctgttc
agcagaatttttaactgcaaccaggaagaaatggtccgggacctggagcagggagatgtt
tccgagaccgtacggatcttcttcgagcacagcaagacgtgtcctccagcagccaagagc
gtgctgaccctccaggaggtggatgaattcctcatccagctctccaagctcaccaaggag
gatgaccagcagagtgtcctgcagcagatcagtcgcaggtgtacaggcaatgacctgaag
tgtatcatcaggctaattaagcatgacttgaaaatgaatgctggagcaaagcacgtgctg
gatgctctggatcccaatgcctacgaggccttcaaggcctccaggaacctgcaggacgtg
gtggagcgagtgctgcagaaccagcaggagtctgagaaggtgccagggctgaagaagacc
ctgagtgtgcaggcctcactcatgaccccagtgcagcccatgctggctgaggcctgcaag
tccatcgagtacgccatgaagaagtgtcccaacgggatgtacgccgagatcaagtacgac
ggcgagcgcgtgcaggtgcacaagaacggggatcacttcagctacttcagcaggagcctc
aaacctgtgctcccccacaaagtagcccattttaaggatttcatcccccaggctttccct
ggtgggcagagtatgatcctggattcagaagttctcctgattgataataaaactggcaag
ccacttccttttgggactcttggtgtgcacaagaaagctgctttccaggatgccaatgtt
tgcctgtttgtgtttgactgcatctacttcaacaatgtcagcctgatggacaggcccctg
tgtgaacggcgcaagttcctccacgacaacatggtggagatccccaacaggatcctgttc
tcagagatgaaacatgtcacaaaagcttcagatctggcagacatgatcacccgagtcatc
cgggaggggctggaagggctggtgctgaaagatttaaaggggaattacgaaccagggaag
cgccactggctgaaggtgaagaaggattatctcaacgagggggcaatggctgacacagct
gacctggtggttctgggggctttctatggacagggcagtaaaggtgggatgatgtccatc
ttcctcatgggctgctacgaccccaagagtgagaagtggtgcacggtgaccaagtgctct
ggtggccacgacgacgccaccctggcacgtctgcagacagagctggacatggtgaagatc
agcaaggatcctagtaaaattccaaggtggctaaaaattaacaaaatctactacccagac
ttcattgtcccagatccaaagaaagccccagtgtgggagatcaccggggccgagttctcg
cgggccgaggcgcacacggccgacggcatctccatccgcttcccgcgctgcacccgcatc
cgccacgacaaggactggcagagtgccaccaacctgcagcagctcaaggagctgtaccag
ctctccaaggagaaggctgatttcagtgttacagctggggaggaagatgagtccacagct
ggcagcagtggagagaatgatgggaattccaggtcttccacacctcacagcagtattacg
agtcccccaagcaagtcacctgcaaaaactcagaaggcagaagagagcaaaggagtcatt
ggatcccctgagaaatccgaggagaaacgaggggagaagagaaaagcatccgagctggag
gacaatggcaagaagcagccgctgctggacattttcacgggggtgaagctgtacctggcg
ccctccgtgaaggactttgcccgaatccgccgctacttcatcgccttcgacggggacctg
gtggaagagttcgacacggcctcggccacgcacgtcatcggggacagcggggacagcccc
ggcgccgtgcgcgtcacgccccgctggatctgggagtgcatccgcaagcgccggctggtg
gcgccgtgctag
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