Oenanthe melanoleuca (Eastern black-eared wheatear): 130260771
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Entry
130260771 CDS
T09236
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03030
DNA replication
oma03420
Nucleotide excision repair
oma03430
Mismatch repair
oma03440
Homologous recombination
oma03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130260771 (RPA1)
03420 Nucleotide excision repair
130260771 (RPA1)
03430 Mismatch repair
130260771 (RPA1)
03440 Homologous recombination
130260771 (RPA1)
03460 Fanconi anemia pathway
130260771 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oma03000
]
130260771 (RPA1)
03032 DNA replication proteins [BR:
oma03032
]
130260771 (RPA1)
03400 DNA repair and recombination proteins [BR:
oma03400
]
130260771 (RPA1)
Transcription factors [BR:
oma03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130260771 (RPA1)
DNA replication proteins [BR:
oma03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130260771 (RPA1)
DNA repair and recombination proteins [BR:
oma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130260771 (RPA1)
MMR (mismatch excision repair)
130260771 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
130260771 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
IBR
Motif
Other DBs
NCBI-GeneID:
130260771
NCBI-ProteinID:
XP_056362437
LinkDB
All DBs
Position
19:complement(4605016..4627889)
Genome browser
AA seq
613 aa
AA seq
DB search
MSGRLSEGAIAAIMQGEEVSKPVLQVINTRAIATGTGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVENERLSAWCICQVNRFIVNSLKDGRRVVILMDVNVLQTADQVGGPIGSPQPYNEG
QGQRSAAPAGNPAPSKPQQQNGNLSGAGPAAPKYHAPSNQFGKASAPSALKTPGGSQAKV
VPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQADK
FFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAQHLPSVQFDFVS
ISDLENKPKDSIVDVIGICKSYEDVTKITVKANNREVSKRNVHLMDTSGKLVTATLWGNE
AEQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLEC
ASISDVRGGPGAGANTNWKTLFEAKSENLGQGDKADYFSCVGTIVHLRKENCMYQACPSQ
DCNKKVIDQQNGLYRCEKCDREFPNFKYRLMLLVTIADCLEYQWVTCFQDTAEFILGQNA
AFLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAMDIKPVNYREYSK
RLIANIRRNAQLG
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggcggctgagcgagggggccatcgcggccataatgcaaggggaggaggtgtcc
aagcccgtgctgcaagtcataaatacacgggctattgccacaggaaccgggcccccacgt
taccgagtgctgatgagtgatggggtgaacaccctttcctcattcatgttggcaacacag
ctgaactccctggtggaaaacgagcgcttgtcagcctggtgtatctgccaggttaacaga
ttcattgtcaacagcctgaaagatggaaggagagtggttatcctgatggatgtaaatgtc
ctgcaaactgctgatcaggttggtgggcctattggcagtccccagccatacaatgaagga
caggggcaacgttctgcagctccagcaggaaacccagcacccagcaaacctcagcagcaa
aatggcaatttgtctggagcaggtcctgctgctcccaagtaccatgctccctccaaccag
tttggaaaagccagtgctcccagtgccctgaagacacctggggggtctcaggccaaagtg
gtgcccattgccagcttgaatccataccagtccaagtggaccatttgtgctcgtgttacc
caaaaaggtcagatccgcacgtggagcaactcccgtggtgaaggaaagctcttctccata
gagctggttgatgaaagtggtgagattagagctactgcattcaacgatcaagcagacaag
ttttttccactcattgaattgaacaaggtatattattttaccaaaggcaatttgaagact
gctaacaagcaatatacagctgttaagaatgactatgagattacattcactaatgagact
tcagttgtgccctgtgatgatgcccagcatcttccatctgttcagtttgattttgtatcc
atctctgacttggagaacaagcccaaagactcaattgttgatgtaattggaatttgcaaa
agctacgaagatgtcactaaaattacagtgaaagctaacaatagggaggtttcaaagagg
aacgtgcatctgatggatacatcagggaaactggtgacagctacgctgtggggaaatgag
gctgaacagtttgatggttccagacaacctgtgattgccatcaaaggagcccgagtctct
gactttggtggcagaagcctgtctgtcctgtcctccagcacagttgtcatcaaccctgat
agcccagaggctttcaagctccgaggatggtttgactccgaggggcagcttctggaatgt
gcctccatctctgatgtgaggggtgggccaggagctggagcaaataccaactggaaaact
ttgtttgaagccaaatctgagaacttgggacaaggagataaggcagattattttagctgt
gtgggcacaattgtacatctgcgcaaagagaactgcatgtaccaggcatgtccctcccag
gattgcaacaagaaagtgatagaccagcaaaatggactttaccgctgtgagaagtgtgac
cgagaattccccaacttcaaataccgcctgatgctcctggtgaccattgcagactgtctg
gagtatcagtgggtgacttgttttcaagacacagcagaattcattcttgggcaaaatgca
gctttcctgggagaactgaaggaaaagaacgagcaggcttttgaagaagtgttccaaaat
gcaaacttcaacacgtacgagttcaggatccgggtgaaactggagacttacaatgatgaa
tctcgtattaaggccacagcaatggacatcaaacccgtgaactacagagaatacagcaag
aggttgattgccaacatcaggagaaatgctcagctggggtga
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