Oenanthe melanoleuca (Eastern black-eared wheatear): 130262190
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Entry
130262190 CDS
T09236
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130262190 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oma03041
]
130262190 (SNRNP40)
Spliceosome [BR:
oma03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130262190 (SNRNP40)
Complex C
U5 SnRNP specific factors
130262190 (SNRNP40)
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GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Cytochrom_D1
WDR54
WD40_like
WD_LRWD1
Beta-prop_Nup120_160
PROPPIN
Motif
Other DBs
NCBI-GeneID:
130262190
NCBI-ProteinID:
XP_056365033
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Position
23:complement(940462..949760)
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AA seq
384 aa
AA seq
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MIEQQKRKVPGPGPGPGPAPGPPPPPAAPGAAPAPGPDLPLVPVPAKRPRHELPVAPGTG
GPGGQPPSGALLQSGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGNTLASAGFDRLILLW
NVYGDCDNFATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSF
VNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGI
DNDIKVWDLRQNKLTYSMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERC
VKIFQGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWDTTSRRILYKLPGHAGSVNEL
AFHPEEPIILSASSDKRLYMGEIQ
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagcagcagaagcggaaggtcccgggccccgggcctggccccggccccgctccc
gggccgcccccgccgcccgccgcccccggcgccgcccccgcgcccggccccgacctcccg
ctcgtcccggtgcccgccaagcggccccgccatgagctgccggtggcgccgggcacgggc
ggtcccggggggcagcctccgagcggagctctgctgcagtcgggccccccacgctgctcc
tcgctgcaggcccccatcatgctgctgtcaggacacgagggggaggtttactgctgcaag
ttccatcccaatggcaacaccctggcctcggctggcttcgacaggctcatcttgctctgg
aatgtctacggggactgtgacaactttgccaccctgaagggacacagtggggctgtcatg
gagctgcactacaacacagatggcagcatgctcttctcagcatccacggacaagacggtg
gcagtgtgggacagcgagacgggcgagagggtgaagcggctgaagggccacacgtccttt
gtcaactcctgctaccccgcgcgcagggggccccagctggtgtgcaccggcagcgacgac
ggcaccgtcaagttgtgggacatcagaaaaaaagctgctgtccagacattccagaacacc
taccaggtcctggctgtcaccttcaatgacaccagtgaccagatcatctctggaggcatt
gacaatgacatcaaggtgtgggacctgaggcagaacaagctcacctacagcatgcgtggc
cacgccgactcggtgaccggcctgagcctcagctctgagggctcctacctgctctccaac
gccatggacaacacagttcggatctgggacgtgaggccctttgcccccaaggagagatgt
gtcaagattttccagggaaatgtccataattttgaaaagaaccttctgaggtgctcctgg
tccccagatggcagtaaaattgcagggggctctgctgacaggtttgtgtacgtgtgggac
accacctccaggaggatcctgtacaagctgcctggccatgctggctctgtcaatgagctg
gctttccaccctgaggagcccatcattctctctgcatccagtgacaagaggctgtacatg
ggggagatccagtga
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integrated database retrieval system
