Oenanthe melanoleuca (Eastern black-eared wheatear): 130262361
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Entry
130262361 CDS
T09236
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03082
ATP-dependent chromatin remodeling
oma03083
Polycomb repressive complex
oma04110
Cell cycle
oma04330
Notch signaling pathway
oma04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130262361 (HDAC1)
03083 Polycomb repressive complex
130262361 (HDAC1)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
130262361 (HDAC1)
04350 TGF-beta signaling pathway
130262361 (HDAC1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
130262361 (HDAC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oma03036
]
130262361 (HDAC1)
Enzymes [BR:
oma01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
130262361 (HDAC1)
Chromosome and associated proteins [BR:
oma03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
130262361 (HDAC1)
HDAC complexes
Sin3A-HDAC complex
130262361 (HDAC1)
BRAF-HDAC complex
130262361 (HDAC1)
REST complex
130262361 (HDAC1)
SHIP complex
130262361 (HDAC1)
MiDAC complex
130262361 (HDAC1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
130262361 (HDAC1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
130262361 (HDAC1)
Chromatin remodeling factors
NuRD complex
130262361 (HDAC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
RNA_polI_A34
Motif
Other DBs
NCBI-GeneID:
130262361
NCBI-ProteinID:
XP_056365416
LinkDB
All DBs
Position
23:complement(4478181..4488700)
Genome browser
AA seq
486 aa
AA seq
DB search
MALTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVAS
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVISKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQPIPEDAVQEDSGDEEEDDPEKRISVRNSNKRISCDEEF
SDSEDEGEGGRKNVANFKKTKRVKAEEEKEEEEKKEEKEEEKAKEEKAAAAAAAEPKGVK
EETKST
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgacgcaggggacgaagcgcaaagtctgctattactacgatggggatgttggg
aattattattatggccaaggacatcccatgaaaccccacaggatccgcatgacccacaac
ctcctgctcaactatgggctctacaggaagatggagatttatcgtcctcacaaggccaat
gcagaggagatgaccaagtaccacagtgatgattacatcaaattcctgaggtccatccgc
cctgacaacatgtctgagtacagcaagcagatgcagagatttaatgttggggaggactgc
cctgtgtttgatgggctctttgagttctgtcagctctctgctggaggctctgttgccagt
gctgtgaagctgaacaagcagcagacagacattgcagtcaactgggcaggggggctccac
catgccaaaaaatcagaagcttcaggattctgctacgtcaacgacatcgtcctggccatc
ctggagctcctcaagtaccaccagcgagtgctgtacattgacattgacatccaccatggg
gatggggtggaggaagctttttacaccacagacagggtcatgactgtgtccttccacaaa
tatggagaatatttcccaggaactggggacctgagggacatcggggcaggcaaagggaaa
tactacgctgtgaattacccgctgcgggacggcatcgacgacgagtcctacgaggccatt
ttcaaacctgtgatctccaaagtgatggagacgttccagcccagcgctgttgtcctgcag
tgtggctctgattccctgtctggggacaggctgggctgcttcaacctcaccatcaaaggc
catgccaagtgtgtggagtttgtgaagagcttcaacctgcccatgctgatgctgggagga
ggggggtacacgatccgaaacgtggctcgctgctggacctacgagactgctgtggccctg
gacactgagatccccaatgaacttccatacaacgactactttgagtactttgggccagac
ttcaagctccacatcagcccctccaacatgaccaaccagaacaccaacgaatacctggag
aaaatcaagcagaggctctttgagaacctgaggatgctcccccacgctcctggggtacag
atgcagccaattcctgaggatgctgtgcaggaggacagtggggatgaggaggaggatgat
cctgagaaacgcatttctgtccgaaattccaacaagaggatctcctgtgatgaggaattc
tcagattctgaggacgagggcgagggggggcgcaagaacgtcgccaacttcaaaaaaacc
aaacgtgtgaaagcagaggaggagaaggaggaggaggagaaaaaagaggagaaggaagag
gaaaaagcaaaagaggaaaaagcagcagcagcagcagcagcagaacccaaaggggtgaag
gaagagacaaaatccacctga
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