Oenanthe melanoleuca (Eastern black-eared wheatear): 130262917
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Entry
130262917 CDS
T09236
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03020
RNA polymerase
oma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130262917
09124 Replication and repair
03420 Nucleotide excision repair
130262917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oma03021
]
130262917
03400 DNA repair and recombination proteins [BR:
oma03400
]
130262917
Enzymes [BR:
oma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
130262917
Transcription machinery [BR:
oma03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
130262917
DNA repair and recombination proteins [BR:
oma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
130262917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
130262917
NCBI-ProteinID:
XP_056366398
LinkDB
All DBs
Position
25:4730059..4815686
Genome browser
AA seq
1950 aa
AA seq
DB search
MHGGPPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKILRCVCFFCSKLLVDS
DNPKIKDILGKSKGQPKKRLSHVYDLCKGKNICEGGEEMDHKFGVEQPEGDEDLTKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMDPK
FARPEWMVCTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLAIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV
EFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEELVKDILSNAHIQNELEREFERMRE
DREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINSRLPSDLHPVKVVEGVKELSRKLV
IVNGEDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTV
FLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPD
FDVSRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
AAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKHGMEIPSALPGLGVGGPTGM
FFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGGAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS
PSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSP
KYSXPGYSPTSPTYSLTSPAISPDDSDDDN
NT seq
5853 nt
NT seq
+upstream
nt +downstream
nt
atgcacggcgggccgccctcaggcgacagcgcctgcccgctgcgcaccatcaaacgagtc
cagttcgggatcctcagccccgatgagatgaaacggatgtcggtgaccgaggggggcatc
aagtaccccgaaaccaccgagggggggcgccccaaactgggggggctgatggaccccagg
cagggcgtgatcgagagaacggggcgctgccagacctgcgctgggaacatgacagagtgc
ccaggtcactttgggcacatcgagctggccaagcccgtgttccacgtggggtttctgggg
aagacgatgaagatcctgcgctgcgtctgcttcttctgctccaagctgctggtggactcg
gataaccccaaaatcaaggacatcctgggcaagtccaaggggcagcccaagaagaggctg
agccacgtctacgacctgtgcaagggcaagaacatctgcgaggggggcgaggagatggat
cacaagttcggggtggagcagcccgagggcgacgaggacctcaccaaggagaagggccac
ggcggctgcggccgctaccagccgcgcatccggcgctcggggctggagctctacgccgag
tggaaacacgtcaacgaggattcccaggagaagaagatcctgctgagccccgagcgcgtg
cacgagatcttcaagcgcatctcggacgaggagtgcttcgtgctgggcatggaccccaag
ttcgcccggcccgagtggatggtgtgcacggtgctgcccgtgccccccctgtctgtgaga
cctgccgtggtcatgcagggctcagccaggaaccaggatgacctgacccacaagctggcc
gacatcgtgaagatcaacaaccagctgaggcgcaacgagcagaacggggcggccgcgcac
gtcatcgccgaggacgtcaaactgctgcagttccacgtggccaccatggtggacaacgag
ctgcccgggctgcccagggccatgcagaagtcggggcgccccctgaagtccctgaagcag
cggctgaaggggaaggaggggcgggtgagggggaacctgatgggcaagagggtggatttc
agcgcccgcaccgtcatcacgcccgaccccaacctggccatcgaccaggtgggagtgccc
agatccatcgctgccaacatgacctttgctgagattgtcacccccttcaacatcgacagg
ctgcaggagctggttcgcagggggaacagtcagtacccaggagccaagtacatcatcagg
gacaacggggacaggatcgacctgcgcttccaccccaagcccagcgacctgcacctgcag
attggctacaaggtggagcgtcacatgtgtgatggggacattgtgatcttcaaccggcag
ccgaccctgcacaagatgtccatgatgggccacagggtcaggatcctgccctggtccaca
ttcaggctcaacctcagtgtcaccactccctacaacgccgattttgacggtgacgagatg
aacctgcacctgccgcagtcgctggagacgcgggccgagatccaggagctggccatggtg
cccaggatgatcgtcaccccccagagcaaccggcccgtcatgggcatcgtgcaggacacg
ctgacggccgtgcgcaagttcaccaagagggacgtcttcctcgagaggggcgaggtgatg
aacctgctgatgttcctctccacctgggatggcaaggtgccccaacctgccatcctgaag
cccaggcccctctggacagggaaacaaatcttctccctgatcatccccgggcacatcaac
tgcatccgcacgcacagcacgcaccccgacgacgaggacagcggcccctacaagcacatc
tcccctggggacaccaaggtgatcgtggagaacggggagctgatcatgggcatcctgtgc
aagaagtctctggggacctcggcggggtcgctggtgcacatctcgtacctggagatgggc
cacgacaccacgcgcctgttctacagcaacatccagactgtcatcaacaactggctgctg
atcgagggtcacaccattggcattggggactccattgctgatgccaaaacctaccaggac
atccagaacaccatcaagaaagccaagcaggatgtcattgaggtgatagagaaggctcac
aacaacgagctggagcccaccccaggcaacaccctgagacaaaccttcgagaaccaggtg
aacaggatcctgaacgacgcccgcgacaagacgggatcctcggcccagaaatccctctcc
gagtacaacaacttcaaatccatggtggtctcgggggccaagggctccaagatcaacatc
tcccaggtgattgccgtggtggggcagcagaacgtggaggggaagcggatcccgttcggc
ttcaagcaccggacgctgccgcacttcatcaaggacgactacggccccgagagccgcggc
ttcgtggagaactcgtacctggcggggctgacgcccacagagttcttcttccacgccatg
ggcgggcgcgaggggctgatcgacacggctgtgaaaacggctgagactgggtacatccag
cggcgcctgatcaagtcgatggagtcggtgatggtcaagtacgacgccacggtcaggaac
tccatcaaccaggtggtgcagctgcgctacggcgaggacgggctggcgggggagagcgtg
gagttccagaacctggcaaccctgaaaccctccaacaaggccttcgagaaaaagttcaag
ttcgactacaccaacgagcgcgcgctgcgccgcacgctgcaggaggagctggtcaaggac
atcctgtccaacgcccacatccagaacgagctggagcgcgagttcgagcgcatgcgcgag
gacagggaggtgctcagggtcatcttccccacgggggacagcaaggtggtgctcccctgt
aacctgctccgcatgatctggaacgcgcagaagattttccacatcaactcccggctgccc
tcggacctgcacccggtcaaggtggtggagggggtgaaggagctgagccgcaagctggtg
atcgtgaacggggaggaccctctgagccggcaggcgcaggagaacgcgacgctgctcttc
aacatccacctgcgctccacgctctgcagccgccgcatggtggaggagttccggctcagc
ggggaggccttcgactggctgctgggggagatcgagtccaagttcaaccaggccatcgcc
caccccggggagatggtgggcgcgctggccgcgcagtccctgggcgagccggccacccag
atgaccctcaacaccttccactacgccggggtgtcggccaagaacgtcaccctgggcgtg
ccccgcctgaaggagctgatcaacatctccaaaaaacccaaaacaccctcgctgacggtg
ttcctgctgggccagagcgcccgcgacgccgagcgcgccaaggacatcctgtgccgcctg
gagcacaccacgctgcgcaaggtgacagccaacaccgccatctactacgaccccaacccg
cagagcacggtggtggccgaggaccaggagtgggtgaacgtgtactacgagatgcccgac
ttcgacgtcagccgcatctcgccctggctgctgcgcgtggagctggaccgcaagcacatg
acggaccgcaagctgaccatggagcagatcgccgagaagatcaacgcaggtttcggtgac
gacctcaactgcatcttcaacgacgacaacgccgagaagctggtgctgcgcatccgcatc
atgaacagcgacgagaacaagatgcaggaggaggaggaggtggtggacaagatggacgac
gacgttttcctgcgctgcatcgagtccaacatgctgacggacatgacgctgcagggcatc
gagcagatcagcaaggtgtacatgcacctgccccagacagacaacaagaagaagatcatc
atcaccgaggacggcgagttcaaggcgctgcaggaatggatcctggagacggacggcgtc
agcctgatgcgcgtgctgagcgagaaggacgtggatcctgtgaggacaacgtccaatgac
atcgtggagatcttcactgttctgggcatcgaggcggtgcggaaggcgctggagcgggag
ctgtaccacgtcatctccttcgacggttcctacgtcaactaccggcacctggcgctgctg
tgcgacaccatgacgtcgcggggacacctgatggccatcacccggcacggcgtcaaccgg
caggacaccgggcccctgatgaagtgttccttcgaggagacggttgatgtcctgatggag
gcagctgcccacggggagagtgaccccatgaagggggtgtctgagaacatcatgctgggg
cagctggcgccggccggcaccggctgcttcgacctgctgctggacgccgagaaatgcaaa
cacggcatggagatccccagcgccctgcccgggctcggcgtcggcggccccaccgggatg
ttcttcggctccgcccccagccccatgggggggatgtccccggccatgaccccctggaac
cagggggccaccccggcctacggcgcctggtcccccagcgtgggcagcgggatgaccccg
ggcggggccgggttctcccccagcgccgcctccgacgcctccgggttcagccccggttac
tccccggcctggtcaccaacacccggctcgccggggtcacccggcccctccagcccctac
atcccctcccccggtggcgccatgtcccccagctacagcccgacgtcccccgcctacgag
ccgcggtcgccggggggctacaccccgcagagccccagctacagccccacctcgcccagc
tacagccccacttctcccagctacagccccacctcgcccaactacagccccacctcgccc
agttacagccccacctctcccagttacagcccgacctcgcccagctacagcccgacctcg
cccagttacagccccacctcgccgagctacagcccaacctctcccagctacagcccgacc
tctcccagttacagccccacctctcccagttacagcccgacctctcccagttacagcccg
acctcgccgagctacagcccgacctcgccgagctacagccccacttctcccagttacagt
cccacttctcccagttacagccccacctctcccagctacagcccaacttctccaagctac
agccccacctcgcccaactacagccccaccagccccaactacaccccgacctctccaagc
tacagccccacctctcccagctacagccccaccagccccaactacaccccgacctcgccc
aactacagccccacctctcccagctacagccccacctcccccagttacagccccacctct
cccagttactccccgtccagcccccgctacaccccgcagtcgcccacctacacccccagc
agccccagctacagccccagcagccccagctacagccccacctcccccaagtacaccccg
acctcgcccagctacagccccagctcccccgagtacaccccgacctcgcccaagtacagc
cccacctcgcccaagtacagccccacctctcccaagtacagccccacgtcgcccacctac
agccccaccacgcccaagtacagccccacctcgcccacctacagccccacctcgcccgtc
tacaccccgacctcgcccaagtacagccccacctctcccacctacagccccacctcgccc
aagtacagcnnccccggctacagccccacgtcgccgacctacagcctcaccagcccggcc
atcagccccgacgacagcgacgacgacaactga
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integrated database retrieval system
