Oenanthe melanoleuca (Eastern black-eared wheatear): 130262933
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Entry
130262933 CDS
T09236
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03013
Nucleocytoplasmic transport
oma03015
mRNA surveillance pathway
oma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130262933
09122 Translation
03013 Nucleocytoplasmic transport
130262933
03015 mRNA surveillance pathway
130262933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oma03019
]
130262933
03041 Spliceosome [BR:
oma03041
]
130262933
Enzymes [BR:
oma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130262933
Messenger RNA biogenesis [BR:
oma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130262933
Spliceosome [BR:
oma03041
]
Complex C
Other components
EJC/TREX
130262933
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130262933
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130262933
NCBI-ProteinID:
XP_056366413
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All DBs
Position
25:4308074..4340326
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENAAGADGAEAAPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtggacaacgagctgctggactacgaggacgatgaggtggagaac
gcggccggggccgacggcgccgaggccgcgcccaagaaggacgtgaagggctcgtacgtg
tccatccacagctccggcttccgcgacttcctgctcaaacccgagctgctgcgagccatc
gtggactgcggcttcgagcacccctctgaagtgcagcacgagtgcatcccccaggccatc
ctgggcatggacgtgctgtgccaggccaagtccggcatgggcaagacggccgtgttcgtg
ctggccaccctgcagcagctggagcccgtcaccggccaggtgtccgtgctggtgatgtgc
cacacccgtgaactcgccttccagatcagcaaggagtacgagcgcttctccaagtacatg
cccagcgtcaaggtggcagtgttcttcgggggcctgtccatcaagaaggacgaggaggtg
ctgaagaagaactgcccccacatcgtggtggggacgccgggcaggatcctggcgctggcc
cggaacaagagcctgaacctgaaacacatcaagcacttcatcctggacgagtgcgacaag
atgctggagcagctggacatgcggcgggacgtgcaggagattttccggatgacgccgcac
gagaagcaggtgatgatgttcagcgccaccctcagcaaggagatccggcccgtctgccgc
aagttcatgcaggatcccatggagattttcgtggacgacgagacgaagctgacgctccac
gggctgcagcaatattatgtcaaactcaaggacaacgagaagaacaggaaactcttcgac
ctgcttgatgtgctggagttcaaccaggttgtgattttcgtgaagtcggttcagcgctgc
atcgccctggcccagctgctggtggagcaaaacttcccggccatcgccatccaccggggc
atgccgcaggaggagaggctgtcccggtaccagcagttcaaggacttccagcgccgcatc
ctggtggccacgaacctgtttgggcgggggatggacatcgagagggtgaacatcgccttc
aactacgacatgcccgaggactcggacacctacctgcacagggtggcccgggccgggcgc
ttcggcaccaagggcttggccatcaccttcgtgtcggacgagaacgacgccaaaatcctc
aacgacgtgcaggaccggttcgaggtgaacatcagcgagctgcccgacgagatcgacatc
tcctcctacattgaacagacccgataa
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