Oenanthe melanoleuca (Eastern black-eared wheatear): 130263029
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Entry
130263029 CDS
T09236
Symbol
SMARCA4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130263029 (SMARCA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oma03021
]
130263029 (SMARCA4)
03036 Chromosome and associated proteins [BR:
oma03036
]
130263029 (SMARCA4)
Transcription machinery [BR:
oma03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130263029 (SMARCA4)
Chromosome and associated proteins [BR:
oma03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
130263029 (SMARCA4)
Chromatin remodeling factors
BAF complex
130263029 (SMARCA4)
PBAF complex
130263029 (SMARCA4)
GBAF(ncBAF) complex
130263029 (SMARCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
130263029
NCBI-ProteinID:
XP_056366437
LinkDB
All DBs
Position
25:complement(9151168..9178341)
Genome browser
AA seq
1610 aa
AA seq
DB search
MATPEPPLGGTPRPGPSPGPGPSPGSMLGPSPGPSPGSGHSGHALPAPGYAPEPMHPLHK
PLDPMHEKGMSEDPRYGQMKGMGMRPGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPV
PSNGPSGASAGGSGAALDGSSSDSPALGRGPSPFNAAQLHQLRAQIMAYKLLARGQPLPE
HLQVAVQGKRPLPGMQPQIPALPPPAGAAQGPGPAPGAGPAPPGYSRPHGIGGPNMPPPG
PSGVPPGMPGQPPGGPPKPWPEGPLSAAAPGGAPQKLLPPPPAGRPSPVPPAVPPASPGP
PPPSPGQPAPPALPMHPKQNRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPG
SLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREA
RITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVSGKIQKLTKAVATYHAN
TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ
HKAAQVAKEKKKKKKKKKAENAEGQAPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTG
TDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPALPVEEKKKIP
DPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVN
GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP
LSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILA
KIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPT
IFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEK
VEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM
FQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTI
MEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTV
IIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA
GMFDQKSSSHERRAFLQAILEHEEQDESRQSAGSGSFPHAASSLCLGAESEEAPLKEEDE
VPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWILKDDAEVE
RLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKR
EPEGPAGPPPSARSRDKDEESRKQKKRGRPPAEKLSPNPPPLTRKMRKIVDAVIKYKDSS
SGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNA
QTFNLEGSLIYEDSIVLQSVFTSVRQKVEKEEESDGEESEEEEEGEEEGSESEARSVKVK
IRLGRKEKVPERGKGRRRGGRGGRPKPLLSDDESEDEQEEDRSGSGTEDD
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atggcgactccggagcccccgctgggagggaccccccggcccggcccctctcccgggccc
gggccctcgcctgggtccatgctgggcccgtctcccggcccctcacccggctcaggacac
tcggggcacgcgctgccagcgccgggctacgccccggagcccatgcaccccctgcacaag
cccctcgatccgatgcacgagaagggaatgtcggaggatccgcgctacgggcagatgaag
gggatgggaatgcggccaggggggcacgcgggaatgggccccccacccagccccatggat
cagcattcccaaggttatccatccccgctgggcggctccgagcacgcctccagcccggtg
ccgtccaacggcccctcgggcgcctccgcgggcggctctggcgcggcgctggacggctcc
agctcggactcaccggcgctgggccggggcccgtccccgttcaacgcggcgcagctgcac
cagctccgtgcccagatcatggcctacaagctgctggcgcgggggcagccgctcccagag
cacctccaggtggccgtccagggaaagcggccgctgcccgggatgcagccgcagattcct
gctctacctccgcccgccggcgccgcgcagggcccgggaccagcgcccggagcggggccg
gcgccgcccggctactccagacctcatggaataggagggcccaacatgccccctcccgga
ccctcaggagttccccccggcatgccgggtcagccgcccggaggccctcccaagccctgg
ccagaagggccgctgtcggcggcagctccaggcggggccccccagaagctgctgccgccg
ccccccgcaggccgcccctcgcccgtgcccccggccgtgcccccggcgtcccccgggccc
cctcctccctcgccagggcagccggcgccgcccgcgctgccgatgcaccccaagcagaac
cggatcacccccatccagaaaccgcgcggcctcgaccccgtggagatcctgcaggagcgc
gagtacagactccaagcccgcatcgcccaccgcatccaagagctggaaaaccttcctggc
tccttggccggggacctgcggaccaaagcaaccatcgagctcaaggctctgcggctgctc
aacttccagcgccagctgcggcaggaggtggtggtgtgcatgcggcgggacacggcgctg
gagacggcgctcaacgccaaggcctacaagcgcagcaagcggcagtcgctgcgcgaggcc
cgcatcacggagaagctggagaagcagcagaagatcgagcaggagcggaagcgccggcag
aagcaccaggagtacctcaacagcatcctgcagcacgccaaggacttcaaggaataccac
cgcagcgtgagcggcaagatccagaagctgaccaaggccgtggccacgtaccacgccaac
acggagcgcgagcagaagaaggagaacgagcgcatcgagaaggagcggatgcgccggctc
atggcagaggatgaggaaggctaccggaagctcatcgaccagaagaaggacaagcgcctg
gcctacctgctgcagcagacggacgagtatgtggccaacctgacagagctcgtgcggcag
cacaaggcggcccaggtggccaaggagaagaagaagaagaaaaagaagaagaaggcagag
aatgctgaaggacaggctccagccatcggccctgacggggagccactggatgagacgagc
cagatgagtgacctcccggtgaaggtgatccacgtggagagtgggaagatcctcactggc
accgacgcgcccaaggctgggcagctcgaggcctggctggaaatgaaccctgggtatgag
gtggctccacgctctgacagcgaggagagcggctctgaggaggaggaggaggaggaggaa
gaggagcagccacagccagcacagccagcactgcctgtggaggagaagaaaaagattcca
gatccagacagtgacgacgtctcggaagtggatgcccgacacatcatcgagaacgccaag
caggacgtggatgacgagtacggggtgtcgcaggcgctggcgcgggggctgcagtcctac
tacgccgtggctcacgccgtgaccgagcgcgtggacaagcagtcggccctgatggtcaac
ggcgtcctcaagcagtaccagatcaaaggcctggagtggctcgtgtccctgtacaacaac
aacctcaatgggattctggccgatgagatgggactggggaaaaccatccagaccatcgcc
ctcatcacgtacctcatggagcacaagcggatcaacggccccttcctcatcatcgtcccg
ctctcgactttgtccaactgggcctatgaatttgacaaatgggctccctccgtggtcaag
gtctcctacaagggctctccggcagcgcggcgcgccttcgtccctcagctccgcagcggg
aagttcaacgtcctgctcaccacctacgagtacattatcaaggacaagcacatcctggcc
aagatccgctggaagtacatgattgtggacgaggggcaccgcatgaagaatcaccactgc
aaactgacccaggtgctcaacacccactacgtggccccacggcggctgctgctcaccggg
accccgctccagaacaagctcccggagctctgggctctcctcaacttcctgctcccaacc
atcttcaagagctgcagcacctttgagcagtggttcaacgcgccgttcgccatgactggg
gagaaggtggacctgaacgaggaggagacgatcctcatcatccgccgcctgcacaaggtg
ctccggcccttcctgctccggcgcctcaagaaggaggtggaagctcagctcccagaaaag
gtcgagtacgtgatcaagtgcgacatgtcggcgctgcagcgggtcctgtaccggcacatg
caggccaagggcgtcctgctcacggatggctccgagaaggacaagaagggcaaaggcggc
acgaagacactgatgaacacgatcatgcagctgcgcaagatctgcaaccacccctacatg
ttccagcacatcgaggaatccttctcagagcatttggggttcactggcgggatcgtgcag
gggctggatttataccgtgcctccgggaagtttgagctcctggaccggatcctgcccaag
ctccgggccaccaaccacaaggtgctgctcttctgccagatgacctccctgatgaccatc
atggaggattattttgcttaccgtggcttcaaatacctcaggctggatggcaccaccaag
gcggaggaccgggggatgctgctgaagacattcaatgagccgggctccgagtatttcatc
ttcctgctgagcacacgggccggggggctggggctcaacctgcagtcggccgacaccgtc
atcatcttcgacagcgactggaacccgcaccaggacctgcaagcccaggaccgggcgcac
cgcatcgggcagcagaacgaggtgcgcgtgctgcggctctgcaccgtcaacagcgtggag
gagaagatcctggcagccgccaagtacaagctcaacgtggaccagaaggtgatccaggcc
gggatgttcgaccagaaatcctccagccacgagcgccgggcgttccttcaggccatcctg
gagcacgaggagcaggatgagagcagacagagcgcgggcagtggcagcttcccccacgct
gcctcctccctgtgcctgggcgctgagtcggaggaagcacctctaaaggaggaggacgag
gtgcctgacgacgagaccgtgaaccagatgatcgcccggcacgaggaggagttcgacctg
ttcatgcgcatggacctggaccggcggcgcgaggaggcgcgcaaccccaagcggaagccg
cggctgatggaggaggacgagctcccgtcctggatcctgaaggatgacgccgaggtggag
cggctcacctgcgaggaggaggaggagaagatgttcggccgcggctcccggcaccgcaag
gaggtggattacagcgattccctgacggaaaagcagtggctgaaggccatcgaggagggg
acactggaggagatcgaggaggaagtgcggcagaagaaatcctctcggaagcggaagcgg
gagcccgaggggccggcggggcctcccccgagcgcccggagccgggacaaggatgaggag
agcaggaagcagaagaagcgaggacggcccccggctgaaaaactgtccccaaatccaccc
cccttgacccggaaaatgaggaaaatcgtggatgctgtcatcaagtacaaggacagcagc
agcgggcgacagctgagcgaggttttcatccagctcccgtcccgcaaggagctgccggaa
tactacgagctcatccggaaacctgtggacttcaagaagatcaaggagaggatccgaaac
cacaagtaccggagcctcaacgacctggagaaggacgtgatgctgctgtgccagaacgcc
cagaccttcaacctggaggggtccctgatctatgaggattccatcgtgctccagtctgtg
ttcaccagcgtccggcagaaggtggaaaaggaggaggaaagcgacggagaggagagcgag
gaggaggaggagggagaggaggaaggatctgaatccgaggctcgctccgtgaaggtgaag
atccgtctgggccgaaaggagaaggttccagagcgcgggaagggccggcgccggggcggg
cgggggggacgccccaaacccctcctgagcgacgatgagagcgaggacgagcaggaggag
gatcgctccggcagcggcactgaggatgactga
DBGET
integrated database retrieval system
